Basic Information:

  VIRBase ID:  

VHID00095963

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-3p:  MIMAT0008403          CDRT4:  NM_001204477     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-3p	CDRT4
miRBase Accession/Entrez ID	MIMAT0008403	284040
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CDRT4	chr17:15345710(-) A-I      intronic chr17:15346705(-) A-I      intronic chr17:15346677(-) A-I      intronic chr17:15345612(-) A-I      intronic chr17:15348000(-) A-I      intronic chr17:15347948(-) A-I      intronic chr17:15346666(-) A-I      intronic chr17:15346604(-) A-I      intronic chr17:15346892(-) A-I      intronic chr17:15346885(-) A-I      intronic chr17:15346732(-) A-I      intronic chr17:15346608(-) A-I      intronic chr17:15346801(-) A-I      intronic chr17:15362755(-) A-I      intronic chr17:15346709(-) A-I      intronic chr17:15346648(-) A-I      intronic chr17:15346722(-) A-I      intronic chr17:15345576(-) A-I      intronic chr17:15345661(-) A-I      intronic chr17:15346872(-) A-I      intronic chr17:15345615(-) A-I      intronic chr17:15347815(-) A-I      intronic chr17:15344611(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CDRT4	chr17:15340411-15340412(-) m6A 3'UTR       27773535 chr17:15340418-15340419(-) m6A 3'UTR       27773535 chr17:15340453-15340454(-) m6A 3'UTR       27773535 chr17:15340581-15340582(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr17:15340600-15340601(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr17:15340631-15340632(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr17:15340649-15340650(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr17:15340788-15340789(-) m6A 3'UTR       24284625//27773535//22608085 chr17:15340826-15340827(-) m6A 3'UTR       24284625//27773535 chr17:15340937-15340938(-) m6A 3'UTR       24284625//27773535//22608085 chr17:15340973-15340974(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr17:15341075-15341076(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr17:15341153-15341154(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085 chr17:15341168-15341169(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085 chr17:15341197-15341198(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr17:15341273-15341274(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr17:15341341-15341342(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr17:15341365-15341366(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr17:15341395-15341396(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr17:15341403-15341404(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr17:15341422-15341423(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr17:15341433-15341434(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr17:15341473-15341474(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr17:15341497-15341498(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr17:15341504-15341505(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr17:15343590-15343591(-) m6A 5'UTR//intron       24284625//27773535//22608085 chr17:15355830-15355831(-) m6A exon//intron       27773535 chr17:15405683-15405684(-) m6A intron       27773535 chr17:15405994-15405995(-) m6A intron       24284625//25456834//24981863//27773535//27773536//22608085 chr17:15406003-15406004(-) m6A intron       24284625//25456834//24981863//27773535//27773536//22608085 chr17:15406010-15406011(-) m6A intron       24284625//25456834//24981863//27773535//27773536//22608085 chr17:15406174-15406175(-) m6A intron       24284625//25456834//24981863//27773535//27371828 chr17:15406224-15406225(-) m6A intron       24284625//24981863//27773535 chr17:15406360-15406361(-) m6A intron       24981863//27773535 chr17:15406406-15406407(-) m6A intron       24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CDRT4	Chromatin K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-3p
Interactor2: CDRT4

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg