Basic Information:

  VIRBase ID:  

VHID00095905

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-3p:  MIMAT0008403          TMEM9:  NM_001288565     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-3p	TMEM9
miRBase Accession/Entrez ID	MIMAT0008403	252839
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DERM4//TMEM9A

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMEM9	chr1:201103997-201103998(-) m6A 3'UTR//exon       27773535 chr1:201104037-201104038(-) m6A 3'UTR//exon       27773535 chr1:201104061-201104062(-) m6A 3'UTR//exon       27773535 chr1:201104068-201104069(-) m6A 3'UTR//exon       27773535 chr1:201112486-201112487(-) Am intron       - chr1:201123296-201123297(-) m6A 5'UTR//intron       24981863//27773536 chr1:201123330-201123331(-) m6A 5'UTR//intron       24981863//27371828//27773536 chr1:201123450-201123451(-) m6A 5'UTR//intron       25456834//27371828//27773536 chr1:201123501-201123502(-) m6A 5'UTR//intron       25456834//27773536 chr1:201123607-201123608(-) m6A 5'UTR//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMEM9	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-3p
Interactor2: TMEM9

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg