Basic Information:

  VIRBase ID:  

VHID00095828

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-3p:  MIMAT0008403          TMEM201:  NM_001010866     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-3p	TMEM201
miRBase Accession/Entrez ID	MIMAT0008403	199953
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Ima1//NET5//SAMP1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TMEM201	chr1:9659574(+) A-I      intronic chr1:9660798(+) A-I      intronic chr1:9659495(+) A-I      intronic chr1:9659445(+) A-I      intronic chr1:9659478(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TMEM201	chr1:9659495(+) A-G intron -    22484847 chr1:9660798(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMEM201	chr1:9656965-9656966(+) m6A CDS       - chr1:9657066-9657067(+) m6A CDS       24284625 chr1:9658612-9658613(+) m6A CDS       24284625 chr1:9658671-9658672(+) m6A CDS       24284625 chr1:9661269-9661270(+) m6A CDS       24284625 chr1:9662227-9662228(+) m6A CDS       24284625//25456834 chr1:9662362-9662363(+) m6A 3'UTR//intron       24284625//25456834//24981863 chr1:9664076-9664077(+) m6A 3'UTR//intron       24284625 chr1:9664783-9664784(+) m6A 3'UTR//intron       24284625 chr1:9664841-9664842(+) m6A 3'UTR//intron       24981863 chr1:9673208-9673209(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:9673266-9673267(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:9673284-9673285(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:9673309-9673310(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:9673744-9673745(+) m6A 3'UTR       24284625 chr1:9673911-9673912(+) m6A 3'UTR       24284625//25456834 chr1:9673954-9673955(+) m6A 3'UTR       24284625//25456834//24981863 chr1:9674004-9674005(+) m6A 3'UTR       24284625//25456834//24981863 chr1:9674043-9674044(+) m6A 3'UTR       24284625//25456834//24981863 chr1:9674141-9674142(+) m6A 3'UTR       24284625 chr1:9674194-9674195(+) m6A 3'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMEM201	Chromatin K562 cells     - Cytosol HeLa-S3 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-3p
Interactor2: TMEM201

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg