Basic Information:

  VIRBase ID:  

VHID00095701

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-3p:  MIMAT0008403          PHF13:  NM_153812     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-3p	PHF13
miRBase Accession/Entrez ID	MIMAT0008403	148479
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PHF5//SPOC1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PHF13	chr1:6676170(+) A-I      intronic chr1:6680981(+) A-I      intronic chr1:6677747(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PHF13	chr1:6673939-6673940(+) m6A 5'UTR//exon       24284625//24209618//24981863 chr1:6674124-6674125(+) m6A 5'UTR//exon       24209618 chr1:6674130-6674131(+) m6A CDS//exon       24209618 chr1:6679864-6679865(+) m6A CDS//intron       24284625 chr1:6679947-6679948(+) m6A CDS//intron       24284625//22575960//22608085 chr1:6680046-6680047(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6680061-6680062(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6680097-6680098(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6680171-6680172(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6680235-6680236(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6680300-6680301(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6680315-6680316(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6680358-6680359(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6680379-6680380(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6680391-6680392(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6681485-6681486(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6681629-6681630(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6681692-6681693(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6681778-6681779(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6681832-6681833(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6681852-6681853(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6681932-6681933(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6681937-6681938(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6682103-6682104(+) m6A 3'UTR//intron       - chr1:6683666-6683667(+) Y 3'UTR       25219674//26075521

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PHF13	Cytosol HCC cell line (HepG2)|HeLa-S3 cells     - Exosome Blood     - Nucleolus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-3p
Interactor2: PHF13

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg