Basic Information:

  VIRBase ID:  

VHID00095579

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-3p:  MIMAT0008403          EDARADD:  NM_080738     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-3p	EDARADD
miRBase Accession/Entrez ID	MIMAT0008403	128178
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ECTD11A//ECTD11B//ED3//EDA3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	EDARADD	chr1:236631111(+) A-I      intronic chr1:236613988(+) A-I      intronic chr1:236613966(+) A-I      intronic chr1:236631107(+) A-I      intronic chr1:236614029(+) A-I      intronic chr1:236614023(+) A-I      intronic chr1:236613990(+) A-I      intronic chr1:236631108(+) A-I      intronic chr1:236639021(+) A-I      intronic chr1:236645140(+) A-I      intronic chr1:236640554(+) A-I      intronic chr1:236639047(+) A-I      intronic chr1:236599738(+) A-I      intronic chr1:236564255(+) A-I      intronic chr1:236622205(+) A-I      intronic chr1:236564411(+) A-I      intronic chr1:236564418(+) A-I      intronic chr1:236631132(+) A-I      intronic chr1:236594632(+) A-I      intronic chr1:236581645(+) A-I      intronic chr1:236631127(+) A-I      intronic chr1:236592742(+) A-I      intronic chr1:236592703(+) A-I      intronic chr1:236639016(+) A-I      intronic chr1:236592636(+) A-I      intronic chr1:236578802(+) A-I      intronic chr1:236622105(+) A-I      intronic chr1:236590299(+) A-I      intronic chr1:236623097(+) A-I      intronic chr1:236581648(+) A-I      intronic chr1:236632623(+) A-I      intronic chr1:236631137(+) A-I      intronic chr1:236599736(+) A-I      intronic chr1:236599575(+) A-I      intronic chr1:236620651(+) A-I      intronic chr1:236631777(+) A-I      intronic chr1:236595467(+) A-I      intronic chr1:236622203(+) A-I      intronic chr1:236622124(+) A-I      intronic chr1:236599780(+) A-I      intronic chr1:236590206(+) A-I      intronic chr1:236597019(+) A-I      intronic chr1:236623554(+) A-I      intronic chr1:236644988(+) A-I      intronic chr1:236565726(+) A-I      intronic chr1:236632694(+) A-I      intronic chr1:236620735(+) A-I      intronic chr1:236599354(+) A-I      intronic chr1:236578766(+) A-I      intronic chr1:236619328(+) A-I      intronic chr1:236630107(+) A-I      intronic chr1:236565676(+) A-I      intronic chr1:236623562(+) A-I      intronic chr1:236590072(+) A-I      intronic chr1:236619351(+) A-I      intronic chr1:236578768(+) A-I      intronic chr1:236622099(+) A-I      intronic chr1:236565280(+) A-I      intronic chr1:236589998(+) A-I      intronic chr1:236599349(+) A-I      intronic chr1:236596712(+) A-I      intronic chr1:236592868(+) A-I      intronic chr1:236580311(+) A-I      intronic chr1:236634226(+) A-I      intronic chr1:236644999(+) A-I      intronic chr1:236630114(+) A-I      intronic chr1:236632693(+) A-I      intronic chr1:236597018(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	EDARADD	chr1:236646972(+) A-I intron -    22327324 chr1:236572994(+) T-C intron -    22484847 chr1:236599575(+) A-G intron -    22484847 chr1:236616587(+) T-C intron -    22484847 chr1:236623554(+) A-G intron -    22484847 chr1:236623562(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	EDARADD	chr1:236558832-236558833(+) m6A 5'UTR//intron       25456834//24981863 chr1:236558840-236558841(+) m6A 5'UTR//intron       25456834//24981863 chr1:236645578-236645579(+) m6A CDS       24981863//22608085 chr1:236645596-236645597(+) m6A CDS       24981863//22608085 chr1:236645659-236645660(+) m6A CDS       25456834//24981863//26404942//22608085 chr1:236645713-236645714(+) m6A CDS       25456834//24981863//26404942//22608085 chr1:236645812-236645813(+) m6A CDS       25456834//24981863//22608085 chr1:236645929-236645930(+) m6A CDS       25456834//24981863//22608085 chr1:236645989-236645990(+) m6A 3'UTR       25456834//24981863//22608085 chr1:236646041-236646042(+) m6A 3'UTR       25456834//24981863//22608085 chr1:236646054-236646055(+) m6A 3'UTR       25456834//24981863//22608085 chr1:236646061-236646062(+) m6A 3'UTR       25456834//24981863//22608085 chr1:236646178-236646179(+) m6A 3'UTR       24981863//26404942//22608085 chr1:236646296-236646297(+) m6A 3'UTR       24981863//26404942//22608085 chr1:236646313-236646314(+) m6A 3'UTR       24981863//26404942//22608085 chr1:236646378-236646379(+) m6A 3'UTR       24981863//26404942//22608085 chr1:236646442-236646443(+) m6A 3'UTR       24981863//22608085 chr1:236646615-236646616(+) m6A 3'UTR       25456834//24981863//22608085 chr1:236646626-236646627(+) m6A 3'UTR       25456834//24981863//22608085 chr1:236646677-236646678(+) m6A 3'UTR       25456834//24981863//22608085 chr1:236646706-236646707(+) m6A 3'UTR       24981863//22608085 chr1:236646717-236646718(+) Cm 3'UTR       - chr1:236646721-236646722(+) m6A 3'UTR       24981863//22608085 chr1:236646739-236646740(+) m6A 3'UTR       24981863//22608085 chr1:236646761-236646762(+) m6A 3'UTR       24981863//22608085 chr1:236647148-236647149(+) m6A 3'UTR       24981863//22608085 chr1:236647150-236647151(+) Tm 3'UTR       - chr1:236647153-236647154(+) Gm 3'UTR       - chr1:236647320-236647321(+) m6A 3'UTR       22608085 chr1:236647445-236647446(+) m6A 3'UTR       24981863//22608085 chr1:236647497-236647498(+) m6A 3'UTR       25456834//24981863//22608085 chr1:236647589-236647590(+) m6A 3'UTR       25456834//24981863//22608085 chr1:236647646-236647647(+) m6A 3'UTR       25456834//24981863//22608085 chr1:236647743-236647744(+) m6A 3'UTR       25456834//24981863//22608085 chr1:236647752-236647753(+) m6A 3'UTR       25456834//24981863//22608085 chr1:236647812-236647813(+) m6A 3'UTR       24981863//22608085 chr1:236647846-236647847(+) m6A 3'UTR       24981863//22608085 chr1:236647927-236647928(+) m6A 3'UTR       25456834//24981863//22608085 chr1:236647986-236647987(+) m6A 3'UTR       25456834//24981863//22608085 chr1:236648029-236648030(+) m6A 3'UTR       25456834//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	EDARADD	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-3p
Interactor2: EDARADD

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg