Basic Information:

  VIRBase ID:  

VHID00095574

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-3p:  MIMAT0008403          C1orf216:  NM_001348691     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-3p	C1orf216
miRBase Accession/Entrez ID	MIMAT0008403	127703
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	C1orf216	chr1:36179493-36179494(-) m6A 3'UTR       27773535 chr1:36179512-36179513(-) m6A 3'UTR       27773535 chr1:36179525-36179526(-) m6A 3'UTR       27773535 chr1:36179562-36179563(-) m6A 3'UTR       27773535 chr1:36179712-36179713(-) m6A 3'UTR       24209618//25456834//24981863//22608085 chr1:36179726-36179727(-) m6A 3'UTR       24209618//25456834//24981863//22608085 chr1:36179818-36179819(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr1:36179869-36179870(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr1:36179945-36179946(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr1:36179990-36179991(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:36180114-36180115(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:36180175-36180176(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr1:36180212-36180213(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr1:36180260-36180261(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:36180283-36180284(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:36180313-36180314(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:36180327-36180328(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:36180336-36180337(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:36180343-36180344(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:36180380-36180381(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:36180399-36180400(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:36180510-36180511(-) m6A 3'UTR       24284625//24981863//22608085 chr1:36180613-36180614(-) m6A 3'UTR       24284625 chr1:36180928-36180929(-) m6A 3'UTR       22575960 chr1:36180949-36180950(-) m6A 3'UTR       22575960 chr1:36181242-36181243(-) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:36181302-36181303(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr1:36181525-36181526(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr1:36181593-36181594(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr1:36181760-36181761(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr1:36181833-36181834(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr1:36181872-36181873(-) m6A CDS//exon       24284625//24209618//24981863//27371828//27773536//22608085 chr1:36182104-36182105(-) m6A exon//intron       24284625//24209618//24981863//27371828//27773536//22608085 chr1:36182115-36182116(-) m6A exon//intron       24284625//24209618//27371828//27773536//22608085 chr1:36182129-36182130(-) m6A exon//intron       24284625//24209618//27371828//27773536//22608085 chr1:36182157-36182158(-) m6A exon//intron       24284625//27773535//27773536//22608085 chr1:36182245-36182246(-) m6A exon//intron       24284625//27773535 chr1:36182292-36182293(-) m6A exon//intron       24284625 chr1:36182316-36182317(-) m6A exon//intron       24284625 chr1:36184365-36184366(-) m6A 5'UTR//exon       25456834//24981863//27371828//27773536//22608085 chr1:36184370-36184371(-) m6A 5'UTR//exon       25456834//24981863//27371828//27773536//22608085 chr1:36184385-36184386(-) m6A 5'UTR//exon       25456834//24981863//27371828//27773536//22608085 chr1:36184410-36184411(-) m6A 5'UTR//exon       25456834//24981863//27371828//27773536//22608085 chr1:36184455-36184456(-) m6A 5'UTR//exon       25456834//27371828//27773536//22608085 chr1:36184506-36184507(-) m6A 5'UTR       24209618//27371828//27773536 chr1:36184521-36184522(-) m6A 5'UTR       24209618//27371828//27773536 chr1:36184526-36184527(-) m6A 5'UTR       24209618//27371828//27773536 chr1:36184609-36184610(-) m6A 5'UTR       24209618//27773536//22608085 chr1:36184887-36184888(-) m6A 5'UTR       24981863//22608085 chr1:36184896-36184897(-) m6A 5'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	C1orf216	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-3p
Interactor2: C1orf216

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg