Detail Information

Basic Information:


  VIRBase ID:  

VHID00095555

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-3p:           RAVER1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H5-3p RAVER1
miRBase
Accession/Entrez ID		 MIMAT0008403 125950
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RAVER1
chr19:10439035(-) A-I      intronic
chr19:10439010(-) A-I      intronic
chr19:10439141(-) A-I      intronic
chr19:10442861(-) A-I      intronic
chr19:10442835(-) A-I      intronic
chr19:10431097(-) A-I      intronic
chr19:10436945(-) A-I      intronic
chr19:10436940(-) A-I      intronic
chr19:10436909(-) A-I      intronic
chr19:10436783(-) A-I      intronic
chr19:10436740(-) A-I      intronic
chr19:10436110(-) A-I      intronic
chr19:10430923(-) A-I      intronic
chr19:10431058(-) A-I      intronic
chr19:10431085(-) A-I      intronic
chr19:10441781(-) A-I      intronic
chr19:10431112(-) A-I      intronic
chr19:10434662(-) A-I      intronic
chr19:10434689(-) A-I      intronic
chr19:10435233(-) A-I      intronic
chr19:10435232(-) A-I      intronic
chr19:10435228(-) A-I      intronic
chr19:10435183(-) A-I      intronic
chr19:10435180(-) A-I      intronic
chr19:10441782(-) A-I      intronic
chr19:10435152(-) A-I      intronic
chr19:10441769(-) A-I      intronic
chr19:10441654(-) A-I      intronic
chr19:10441645(-) A-I      intronic
chr19:10434702(-) A-I      intronic
chr19:10442799(-) A-I      intronic
chr19:10442279(-) A-I      intronic
chr19:10442275(-) A-I      intronic
chr19:10441904(-) A-I      intronic
chr19:10441844(-) A-I      intronic
chr19:10439022(-) A-I      intronic
chr19:10441640(-) A-I      intronic
chr19:10441577(-) A-I      intronic
chr19:10441567(-) A-I      intronic
chr19:10441557(-) A-I      intronic
chr19:10439214(-) A-I      intronic
chr19:10439206(-) A-I      intronic
chr19:10439176(-) A-I      intronic
chr19:10442240(-) A-I      intronic
chr19:10439146(-) A-I      intronic
chr19:10436874(-) A-I      intronic
chr19:10437672(-) A-I      intronic
chr19:10437567(-) A-I      intronic
chr19:10437554(-) A-I      intronic
chr19:10437249(-) A-I      intronic
chr19:10437245(-) A-I      intronic
chr19:10437236(-) A-I      intronic
chr19:10438145(-) A-I      intronic
chr19:10439220(-) A-I      intronic
chr19:10441480(-) A-I      intronic
chr19:10436394(-) A-I      intronic
chr19:10436831(-) A-I      intronic
chr19:10441657(-) A-I      intronic
chr19:10435248(-) A-I      intronic
chr19:10435134(-) A-I      intronic
chr19:10430932(-) A-I      intronic
chr19:10430422(-) A-I      intronic
chr19:10435161(-) A-I      intronic
chr19:10442873(-) A-I      intronic
chr19:10442347(-) A-I      intronic
chr19:10436365(-) A-I      intronic
chr19:10442276(-) A-I      intronic
chr19:10436708(-) A-I      intronic
chr19:10435199(-) A-I      intronic
chr19:10436675(-) A-I      intronic
chr19:10442803(-) A-I      intronic
chr19:10438995(-) A-I      intronic
chr19:10442701(-) A-I      intronic
chr19:10430542(-) A-I      intronic
chr19:10442809(-) A-I      intronic
chr19:10431111(-) A-I      intronic
chr19:10429715(-) A-I      intronic
chr19:10442299(-) A-I      intronic
chr19:10438983(-) A-I      intronic
chr19:10436848(-) A-I      intronic
chr19:10436925(-) A-I      intronic
chr19:10442941(-) A-I      intronic
chr19:10434747(-) A-I      intronic
chr19:10429309(-) A-I      intronic
chr19:10442725(-) A-I      intronic
chr19:10439184(-) A-I      intronic
chr19:10430962(-) A-I      intronic
chr19:10442900(-) A-I      intronic
chr19:10435865(-) A-I      intronic
chr19:10436930(-) A-I      intronic
chr19:10437358(-) A-I      intronic
chr19:10435326(-) A-I      intronic
chr19:10442919(-) A-I      intronic
chr19:10435219(-) A-I      intronic
chr19:10429605(-) A-I      intronic
chr19:10442773(-) A-I      intronic
chr19:10441494(-) A-I      intronic
chr19:10430945(-) A-I      intronic
chr19:10435128(-) A-I      intronic
chr19:10441495(-) A-I      intronic
chr19:10436809(-) A-I      intronic
chr19:10439127(-) A-I      intronic
chr19:10441618(-) A-I      intronic
chr19:10442693(-) A-I      intronic
chr19:10438208(-) A-I      intronic
chr19:10434768(-) A-I      intronic
chr19:10437973(-) A-I      intronic
chr19:10442246(-) A-I      intronic
chr19:10430963(-) A-I      intronic
chr19:10437539(-) A-I      intronic
chr19:10439030(-) A-I      intronic
chr19:10439145(-) A-I      intronic
chr19:10442867(-) A-I      intronic
chr19:10439064(-) A-I      intronic
chr19:10435192(-) A-I      intronic
chr19:10435237(-) A-I      intronic
chr19:10441483(-) A-I      intronic
chr19:10442947(-) A-I      intronic
chr19:10442839(-) A-I      intronic
chr19:10437736(-) A-I      intronic
chr19:10436819(-) A-I      intronic
chr19:10435864(-) A-I      intronic
chr19:10442703(-) A-I      intronic
chr19:10430916(-) A-I      intronic
chr19:10435129(-) A-I      intronic
chr19:10439142(-) A-I      intronic
chr19:10438068(-) A-I      intronic
chr19:10441624(-) A-I      intronic
chr19:10439072(-) A-I      intronic
chr19:10434773(-) A-I      intronic
chr19:10442706(-) A-I      intronic
chr19:10436766(-) A-I      intronic
chr19:10442838(-) A-I      intronic
chr19:10441658(-) A-I      intronic
chr19:10434712(-) A-I      intronic
chr19:10442946(-) A-I      intronic
chr19:10435193(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RAVER1
chr19:10435817(-) A-I intron -    22327324
chr19:10437736(-) A-I intron -    22327324
chr19:10435134(-) A-G intron -    22484847
chr19:10435192(-) A-G intron -    22484847
chr19:10435237(-) A-G intron -    22484847
chr19:10435817(-) A-G intron -    22484847
chr19:10436809(-) A-G intron -    22484847
chr19:10437539(-) A-G intron -    22484847
chr19:10437736(-) A-G intron -    22484847
chr19:10442809(-) A-G intron -    22484847
chr19:10442919(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RAVER1
chr19:10426930-10426931(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr19:10426967-10426968(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:10427064-10427065(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960
chr19:10427088-10427089(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960
chr19:10427109-10427110(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//22575960
chr19:10427232-10427233(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960
chr19:10427320-10427321(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960
chr19:10427352-10427353(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960
chr19:10427404-10427405(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960
chr19:10427409-10427410(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960
chr19:10427599-10427600(-) m6A 3'UTR//exon       24284625//24209618//27773535//22575960
chr19:10427669-10427670(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr19:10427679-10427680(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr19:10427745-10427746(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr19:10427911-10427912(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535
chr19:10428006-10428007(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535
chr19:10428046-10428047(-) m6A 3'UTR//exon       24981863//26404942//27773535
chr19:10428160-10428161(-) m6A CDS//exon       24284625
chr19:10428275-10428276(-) m6A CDS//exon       -
chr19:10429856-10429857(-) m6A 3'UTR//CDS//exon//intron       24284625
chr19:10429877-10429878(-) m6A 3'UTR//CDS//exon//intron       24284625
chr19:10429907-10429908(-) m6A 3'UTR//CDS//exon//intron       24284625
chr19:10431363-10431364(-) m6A CDS//exon//intron       24284625
chr19:10431369-10431370(-) m6A CDS//exon//intron       24284625
chr19:10431568-10431569(-) m6A CDS//exon//intron       27773535//22575960
chr19:10431598-10431599(-) m6A CDS//exon//intron       27773535//22575960
chr19:10431751-10431752(-) m6A CDS//exon//intron       27773535//22575960
chr19:10432702-10432703(-) m6A exon//intron       27773535
chr19:10432718-10432719(-) m6A exon//intron       27773535//22608085
chr19:10432748-10432749(-) m6A exon//intron       27773535//22608085
chr19:10432754-10432755(-) m6A exon//intron       27773535//22608085
chr19:10432774-10432775(-) m6A exon//intron       27773535//22608085
chr19:10432781-10432782(-) m6A exon//intron       27773535//22608085
chr19:10432793-10432794(-) m6A exon//intron       27773535//22608085
chr19:10432799-10432800(-) m6A exon//intron       27773535//22608085
chr19:10432811-10432812(-) m6A exon//intron       27773535//22608085
chr19:10432817-10432818(-) m6A exon//intron       27773535//22608085
chr19:10432824-10432825(-) m6A exon//intron       27773535//22608085
chr19:10432834-10432835(-) m6A exon//intron       27773535//22608085
chr19:10432840-10432841(-) m6A exon//intron       27773535//22608085
chr19:10432876-10432877(-) m6A exon//intron       27773535
chr19:10432894-10432895(-) m6A exon//intron       27773535
chr19:10432946-10432947(-) m6A exon//intron       27773535
chr19:10433929-10433930(-) m6A CDS//exon       22575960
chr19:10434181-10434182(-) Gm 3'UTR//CDS//exon       -
chr19:10439396-10439397(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27371828//27773536//22575960
chr19:10439476-10439477(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27371828//27773536//22575960
chr19:10439498-10439499(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27371828//27773536//22575960
chr19:10439522-10439523(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27371828//27773536//22575960
chr19:10439699-10439700(-) Y 3'UTR//CDS//exon       26075521
chr19:10439707-10439708(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22575960
chr19:10441138-10441139(-) m6A CDS//intron       24284625//24981863//27773535//27371828//27773536//22575960
chr19:10441152-10441153(-) m6A CDS//intron       24284625//24981863//27773535//27371828//27773536//22575960
chr19:10444036-10444037(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22575960
chr19:10444082-10444083(-) m1A CDS//exon       26863410//26863196

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RAVER1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H5-3p
Interactor2: RAVER1

Evidence Support:


Prediction-Evidence cRep//miRanda//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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