Basic Information:

  VIRBase ID:  

VHID00095548

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-3p:  MIMAT0008403          CYB5D2:  NM_001254755     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-3p	CYB5D2
miRBase Accession/Entrez ID	MIMAT0008403	124936
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CYB5D2	chr17:4049197(+) A-I      intronic chr17:4053045(+) A-I      intronic chr17:4051664(+) A-I      intronic chr17:4049222(+) A-I      intronic chr17:4050474(+) A-I      intronic chr17:4049242(+) A-I      intronic chr17:4049173(+) A-I      intronic chr17:4049167(+) A-I      intronic chr17:4048341(+) A-I      intronic chr17:4049232(+) A-I      intronic chr17:4050477(+) A-I      intronic chr17:4049891(+) A-I      intronic chr17:4049936(+) A-I      intronic chr17:4050428(+) A-I      intronic chr17:4050948(+) A-I      intronic chr17:4050949(+) A-I      intronic chr17:4051008(+) A-I      intronic chr17:4051027(+) A-I      intronic chr17:4051040(+) A-I      intronic chr17:4051537(+) A-I      intronic chr17:4051547(+) A-I      intronic chr17:4051556(+) A-I      intronic chr17:4048099(+) A-I      intronic chr17:4048100(+) A-I      intronic chr17:4048267(+) A-I      intronic chr17:4049114(+) A-I      intronic chr17:4049132(+) A-I      intronic chr17:4049205(+) A-I      intronic chr17:4049748(+) A-I      intronic chr17:4049802(+) A-I      intronic chr17:4049814(+) A-I      intronic chr17:4049851(+) A-I      intronic chr17:4049869(+) A-I      intronic chr17:4051899(+) A-I      intronic chr17:4051900(+) A-I      intronic chr17:4052050(+) A-I      intronic chr17:4058673(+) A-I      intronic chr17:4046761(+) A-I      5'UTR chr17:4046666(+) A-I      5'UTR chr17:4046765(+) A-I      5'UTR chr17:4046780(+) A-I      5'UTR chr17:4053015(+) A-I      intronic chr17:4051967(+) A-I      intronic chr17:4049824(+) A-I      intronic chr17:4052996(+) A-I      intronic chr17:4049218(+) A-I      intronic chr17:4051591(+) A-I      intronic chr17:4052105(+) A-I      intronic chr17:4052007(+) A-I      intronic chr17:4049219(+) A-I      intronic chr17:4049716(+) A-I      intronic chr17:4048220(+) A-I      intronic chr17:4051975(+) A-I      intronic chr17:4049733(+) A-I      intronic chr17:4049302(+) A-I      intronic chr17:4051601(+) A-I      intronic chr17:4049187(+) A-I      intronic chr17:4048354(+) A-I      intronic chr17:4049196(+) A-I      intronic chr17:4056189(+) A-I      intronic chr17:4056171(+) A-I      intronic chr17:4050486(+) A-I      intronic chr17:4052884(+) A-I      intronic chr17:4051763(+) A-I      intronic chr17:4046741(+) A-I      5'UTR chr17:4046543(+) A-I      5'UTR chr17:4046700(+) A-I      5'UTR chr17:4054730(+) A-I      intronic chr17:4051997(+) A-I      intronic chr17:4050522(+) A-I      intronic chr17:4049258(+) A-I      intronic chr17:4057502(+) A-I      intronic chr17:4050515(+) A-I      intronic chr17:4046832(+) A-I      5'UTR chr17:4046811(+) A-I      5'UTR chr17:4046663(+) A-I      5'UTR chr17:4046625(+) A-I      5'UTR chr17:4049527(+) A-I      intronic chr17:4051625(+) A-I      intronic chr17:4049259(+) A-I      intronic chr17:4048287(+) A-I      intronic chr17:4050497(+) A-I      intronic chr17:4051971(+) A-I      intronic chr17:4052336(+) A-I      intronic chr17:4049958(+) A-I      intronic chr17:4049521(+) A-I      intronic chr17:4053021(+) A-I      intronic chr17:4049328(+) A-I      intronic chr17:4048356(+) A-I      intronic chr17:4052982(+) A-I      intronic chr17:4052278(+) A-I      intronic chr17:4052375(+) A-I      intronic chr17:4052286(+) A-I      intronic chr17:4051878(+) A-I      intronic chr17:4048265(+) A-I      intronic chr17:4050490(+) A-I      intronic chr17:4049154(+) A-I      intronic chr17:4052841(+) A-I      intronic chr17:4049315(+) A-I      intronic chr17:4048222(+) A-I      intronic chr17:4049314(+) A-I      intronic chr17:4052950(+) A-I      intronic chr17:4049346(+) A-I      intronic chr17:4051704(+) A-I      intronic chr17:4053025(+) A-I      intronic chr17:4049116(+) A-I      intronic chr17:4054018(+) A-I      intronic chr17:4048107(+) A-I      intronic chr17:4052821(+) A-I      intronic chr17:4049193(+) A-I      intronic chr17:4056165(+) A-I      intronic chr17:4048262(+) A-I      intronic chr17:4050444(+) A-I      intronic chr17:4054989(+) A-I      intronic chr17:4049453(+) A-I      intronic chr17:4049254(+) A-I      intronic chr17:4049416(+) A-I      intronic chr17:4046748(+) A-I      5'UTR chr17:4046566(+) A-I      5'UTR chr17:4046673(+) A-I      5'UTR chr17:4046699(+) A-I      5'UTR chr17:4046740(+) A-I      5'UTR chr17:4046635(+) A-I      5'UTR chr17:4046726(+) A-I      5'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CYB5D2	chr17:4046543(+) A-G exon 5'UTR    22484847 chr17:4046566(+) A-G exon 5'UTR    22484847 chr17:4050444(+) A-G intron -    22484847 chr17:4050497(+) A-G intron -    22484847 chr17:4052286(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CYB5D2	chr17:4046621-4046622(+) m6A 5'UTR//intron       24981863 chr17:4046644-4046645(+) m6A 5'UTR//intron       24981863 chr17:4046740-4046741(+) m6A 5'UTR//intron       24981863//22608085 chr17:4046796-4046797(+) m6A 5'UTR//intron       24284625//24981863//22608085 chr17:4046811-4046812(+) m6A 5'UTR//intron       24284625//24981863//22608085 chr17:4046858-4046859(+) m6A 5'UTR//intron       24284625//24981863//22608085 chr17:4046905-4046906(+) m6A 5'UTR//intron       24284625//24981863//22608085 chr17:4054287-4054288(+) m6A exon//intron       - chr17:4054312-4054313(+) m6A exon//intron       - chr17:4058064-4058065(+) m6A CDS//exon       - chr17:4058086-4058087(+) m6A CDS//exon       24981863 chr17:4060176-4060177(+) m6A CDS//exon//intron       25456834//24981863//22608085 chr17:4060244-4060245(+) m6A CDS//exon//intron       24284625//25456834//24981863//22608085 chr17:4060275-4060276(+) m6A CDS//exon//intron       24284625//25456834//24981863//22608085 chr17:4060302-4060303(+) m6A CDS//exon//intron       24284625//25456834//24981863//22608085 chr17:4060308-4060309(+) m6A CDS//exon//intron       24284625//25456834//24981863//22608085 chr17:4060317-4060318(+) m6A CDS//exon//intron       24284625//25456834//24981863//22608085 chr17:4060491-4060492(+) m6A 3'UTR//exon//intron       24284625//24981863//22608085 chr17:4060559-4060560(+) m6A 3'UTR//exon//intron       24284625//24981863//22608085 chr17:4060625-4060626(+) Y 3'UTR//exon//intron       26075521 chr17:4060663-4060664(+) m6A 3'UTR//exon//intron       24981863//22608085 chr17:4060820-4060821(+) m6A 3'UTR//intron       22608085 chr17:4060985-4060986(+) m6A 3'UTR//intron       22608085 chr17:4067283-4067284(+) m6A intron       27773535 chr17:4067294-4067295(+) m6A intron       27773535//27371828 chr17:4067513-4067514(+) m6A intron       24284625//24981863//27773535//27371828//22608085 chr17:4067531-4067532(+) m6A intron       24284625//24981863//27773535//27371828//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CYB5D2	Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-3p
Interactor2: CYB5D2

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg