Detail Information

Basic Information:


  VIRBase ID:  

VHID00095484

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-3p:           GBP4:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H5-3p GBP4
miRBase
Accession/Entrez ID		 MIMAT0008403 115361
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - Mpa2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GBP4
chr1:89649968(-) A-I      3'UTR
chr1:89649991(-) A-I      3'UTR
chr1:89649350(-) A-I      3'UTR
chr1:89649975(-) A-I      3'UTR
chr1:89649537(-) A-I      3'UTR
chr1:89649425(-) A-I      3'UTR
chr1:89649455(-) A-I      3'UTR
chr1:89649477(-) A-I      3'UTR
chr1:89649971(-) A-I      3'UTR
chr1:89649506(-) A-I      3'UTR
chr1:89650014(-) A-I      3'UTR
chr1:89649515(-) A-I      3'UTR
chr1:89649530(-) A-I      3'UTR
chr1:89649393(-) A-I      3'UTR
chr1:89648270(-) A-I      3'UTR
chr1:89648241(-) A-I      3'UTR
chr1:89648271(-) A-I      3'UTR
chr1:89649345(-) A-I      3'UTR
chr1:89648430(-) A-I      3'UTR
chr1:89648222(-) A-I      3'UTR
chr1:89648427(-) A-I      3'UTR
chr1:89649415(-) A-I      3'UTR
chr1:89648368(-) A-I      3'UTR
chr1:89648200(-) A-I      3'UTR
chr1:89648280(-) A-I      3'UTR
chr1:89648293(-) A-I      3'UTR
chr1:89649495(-) A-I      3'UTR
chr1:89648194(-) A-I      3'UTR
chr1:89648202(-) A-I      3'UTR
chr1:89649453(-) A-I      3'UTR
chr1:89649451(-) A-I      3'UTR
chr1:89648332(-) A-I      3'UTR
chr1:89648286(-) A-I      3'UTR
chr1:89648400(-) A-I      3'UTR
chr1:89649519(-) A-I      3'UTR
chr1:89648334(-) A-I      3'UTR
chr1:89648335(-) A-I      3'UTR
chr1:89648338(-) A-I      3'UTR
chr1:89648341(-) A-I      3'UTR
chr1:89649431(-) A-I      3'UTR
chr1:89649370(-) A-I      3'UTR
chr1:89648343(-) A-I      3'UTR
chr1:89649414(-) A-I      3'UTR
chr1:89648262(-) A-I      3'UTR
chr1:89648344(-) A-I      3'UTR
chr1:89648358(-) A-I      3'UTR
chr1:89648366(-) A-I      3'UTR
chr1:89648333(-) A-I      3'UTR
chr1:89648389(-) A-I      3'UTR
chr1:89649327(-) A-I      3'UTR
chr1:89649341(-) A-I      3'UTR
chr1:89649481(-) A-I      3'UTR
chr1:89648193(-) A-I      3'UTR
chr1:89649468(-) A-I      3'UTR
chr1:89649317(-) A-I      3'UTR
chr1:89649405(-) A-I      3'UTR
chr1:89648261(-) A-I      3'UTR
chr1:89649480(-) A-I      3'UTR
chr1:89649501(-) A-I      3'UTR
chr1:89649559(-) A-I      3'UTR
chr1:89648303(-) A-I      3'UTR
chr1:89648276(-) A-I      3'UTR
chr1:89649561(-) A-I      3'UTR
chr1:89649557(-) A-I      3'UTR
chr1:89649516(-) A-I      3'UTR
chr1:89649522(-) A-I      3'UTR
chr1:89649439(-) A-I      3'UTR
chr1:89649395(-) A-I      3'UTR
chr1:89648381(-) A-I      3'UTR
chr1:89648435(-) A-I      3'UTR
chr1:89649541(-) A-I      3'UTR
chr1:89649549(-) A-I      3'UTR
chr1:89649462(-) A-I      3'UTR
chr1:89649419(-) A-I      3'UTR
chr1:89648347(-) A-I      3'UTR
chr1:89649543(-) A-I      3'UTR
chr1:89649441(-) A-I      3'UTR
chr1:89649494(-) A-I      3'UTR
chr1:89649379(-) A-I      3'UTR
chr1:89649314(-) A-I      3'UTR
chr1:89649340(-) A-I      3'UTR
chr1:89649463(-) A-I      3'UTR
chr1:89648329(-) A-I      3'UTR
chr1:89649560(-) A-I      3'UTR
chr1:89649424(-) A-I      3'UTR
chr1:89649369(-) A-I      3'UTR
chr1:89649487(-) A-I      3'UTR
chr1:89648257(-) A-I      3'UTR
chr1:89648392(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GBP4
chr1:89648257(-) A-I exon 3'UTR    15342557
chr1:89648276(-) A-I exon 3'UTR    15342557
chr1:89648303(-) A-I exon 3'UTR    15342557
chr1:89648329(-) A-I exon 3'UTR    15342557
chr1:89648347(-) A-I exon 3'UTR    15342557
chr1:89648389(-) A-I exon 3'UTR    15342557
chr1:89648435(-) A-I exon 3'UTR    15342557
chr1:89649369(-) A-I exon 3'UTR    15342557   //22327324
chr1:89649379(-) A-I exon 3'UTR    15342557   //22327324
chr1:89649462(-) A-I exon 3'UTR    15342557   //22327324
chr1:89649468(-) A-I exon 3'UTR    15342557
chr1:89649487(-) A-I exon 3'UTR    15342557
chr1:89649549(-) A-I exon 3'UTR    15342557
chr1:89649557(-) A-I exon 3'UTR    15342557
chr1:89649560(-) A-I exon 3'UTR    15342557
chr1:89649561(-) A-I exon 3'UTR    15342557
chr1:89648406(-) T-C exon 3'UTR    21725310
chr1:89649327(-) A-G exon 3'UTR    21725310
chr1:89649369(-) A-G exon 3'UTR    22484847
chr1:89649379(-) A-G exon 3'UTR    22484847
chr1:89649462(-) A-G exon 3'UTR    22484847
chr1:89649463(-) A-G exon 3'UTR    22484847
chr1:89649487(-) A-G exon 3'UTR    22484847
chr1:89649543(-) A-G exon 3'UTR    22484847
chr1:89649549(-) A-G exon 3'UTR    22484847
chr1:89649559(-) A-G exon 3'UTR    22484847
chr1:89649560(-) A-G exon 3'UTR    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GBP4
chr1:89646876-89646877(-) m6A 3'UTR       -
chr1:89646966-89646967(-) m6A 3'UTR       27773535
chr1:89647773-89647774(-) m6A 3'UTR//exon       -
chr1:89647789-89647790(-) m6A 3'UTR//exon       -
chr1:89647835-89647836(-) m6A 3'UTR//exon       -
chr1:89650962-89650963(-) m6A CDS//exon       26404942
chr1:89651050-89651051(-) m6A CDS//exon       27773535
chr1:89652027-89652028(-) m6A CDS//exon       28052920//27773535
chr1:89652058-89652059(-) m6A CDS//exon       28052920
chr1:89652153-89652154(-) m6A CDS//exon       28052920
chr1:89662935-89662936(-) m6A CDS       27371828
chr1:89664504-89664505(-) m6A CDS       27371828
chr1:89664524-89664525(-) m6A 5'UTR       27371828
chr1:89664558-89664559(-) m6A 5'UTR       27371828
chr1:89664575-89664576(-) m6A 5'UTR       27371828
chr1:89664607-89664608(-) m6A 5'UTR       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate GBP4
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H5-3p
Interactor2: GBP4

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Targetscan
Support Database RepTar//VmiReg

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