Basic Information:

  VIRBase ID:  

VHID00095466

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-3p:  MIMAT0008403          CCDC85A:  NM_001080433     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-3p	CCDC85A
miRBase Accession/Entrez ID	MIMAT0008403	114800
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CCDC85A	chr2:56506877(+) A-I      intronic chr2:56506856(+) A-I      intronic chr2:56506846(+) A-I      intronic chr2:56479256(+) A-I      intronic chr2:56479238(+) A-I      intronic chr2:56506837(+) A-I      intronic chr2:56480098(+) A-I      intronic chr2:56480104(+) A-I      intronic chr2:56495680(+) A-I      intronic chr2:56495687(+) A-I      intronic chr2:56567761(+) A-I      intronic chr2:56589883(+) A-I      intronic chr2:56584159(+) A-I      intronic chr2:56567756(+) A-I      intronic chr2:56533472(+) A-I      intronic chr2:56532117(+) A-I      intronic chr2:56416592(+) A-I      intronic chr2:56577450(+) A-I      intronic chr2:56533506(+) A-I      intronic chr2:56586161(+) A-I      intronic chr2:56511647(+) A-I      intronic chr2:56533295(+) A-I      intronic chr2:56588334(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CCDC85A	chr2:56411495-56411496(+) m6A 5'UTR       24209618//24981863 chr2:56419625-56419626(+) m6A CDS       24981863 chr2:56419636-56419637(+) m6A CDS       24981863 chr2:56419646-56419647(+) m6A CDS       24209618//24981863 chr2:56419654-56419655(+) m6A CDS       24209618//24981863 chr2:56419718-56419719(+) m6A CDS       24981863 chr2:56419783-56419784(+) m6A CDS       24981863 chr2:56419819-56419820(+) m6A CDS       24981863 chr2:56420117-56420118(+) m6A CDS       24209618//24981863 chr2:56420133-56420134(+) m6A CDS       24209618//24981863 chr2:56420162-56420163(+) m6A CDS       24209618//24981863 chr2:56420183-56420184(+) m6A CDS       24209618//25456834//24981863 chr2:56420207-56420208(+) m6A CDS       24209618//25456834//24981863 chr2:56420279-56420280(+) m6A CDS       24209618//25456834//24981863 chr2:56420315-56420316(+) m6A CDS       24209618//25456834//24981863 chr2:56420357-56420358(+) m6A CDS       24209618//24981863 chr2:56420423-56420424(+) m6A CDS       24209618//24981863 chr2:56420453-56420454(+) m6A CDS       24209618//24981863 chr2:56570056-56570057(+) m6A CDS       25456834//24981863 chr2:56611414-56611415(+) m6A CDS       24981863 chr2:56611467-56611468(+) m6A CDS       24981863 chr2:56611480-56611481(+) m6A CDS       24981863 chr2:56611507-56611508(+) m6A 3'UTR       24981863 chr2:56611541-56611542(+) m6A 3'UTR       24981863 chr2:56611575-56611576(+) m6A 3'UTR       24981863 chr2:56611581-56611582(+) m6A 3'UTR       24981863 chr2:56611633-56611634(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CCDC85A	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-3p
Interactor2: CCDC85A

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg