Basic Information:

  VIRBase ID:  

VHID00095352

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-3p:  MIMAT0008403          ABCC10:  NR_146762     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-3p	ABCC10
miRBase Accession/Entrez ID	MIMAT0008403	89845
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EST182763//MRP7//SIMRP7

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ABCC10	chr6:43414557(+) A-I      intronic chr6:43397701(+) A-I      intronic chr6:43397643(+) A-I      intronic chr6:43397628(+) A-I      intronic chr6:43397234(+) A-I      intronic chr6:43397707(+) A-I      intronic chr6:43397703(+) A-I      intronic chr6:43407718(+) A-I      intronic chr6:43407280(+) A-I      intronic chr6:43397544(+) A-I      intronic chr6:43407242(+) A-I      intronic chr6:43403226(+) A-I      intronic chr6:43398522(+) A-I      intronic chr6:43398482(+) A-I      intronic chr6:43398541(+) A-I      intronic chr6:43397915(+) A-I      intronic chr6:43407342(+) A-I      intronic chr6:43398561(+) A-I      intronic chr6:43397860(+) A-I      intronic chr6:43407759(+) A-I      intronic chr6:43398245(+) A-I      intronic chr6:43397994(+) A-I      intronic chr6:43398744(+) A-I      intronic chr6:43399368(+) A-I      intronic chr6:43397681(+) A-I      intronic chr6:43397661(+) A-I      intronic chr6:43397708(+) A-I      intronic chr6:43398659(+) A-I      intronic chr6:43397610(+) A-I      intronic chr6:43398103(+) A-I      intronic chr6:43397498(+) A-I      intronic chr6:43408352(+) A-I      intronic chr6:43397380(+) A-I      intronic chr6:43399264(+) A-I      intronic chr6:43398535(+) A-I      intronic chr6:43398486(+) A-I      intronic chr6:43409954(+) A-I      intronic chr6:43398560(+) A-I      intronic chr6:43397968(+) A-I      intronic chr6:43397439(+) A-I      intronic chr6:43397431(+) A-I      intronic chr6:43398736(+) A-I      intronic chr6:43399173(+) A-I      intronic chr6:43398514(+) A-I      intronic chr6:43397401(+) A-I      intronic chr6:43407795(+) A-I      intronic chr6:43397554(+) A-I      intronic chr6:43402993(+) A-I      intronic chr6:43408720(+) A-I      intronic chr6:43397909(+) A-I      intronic chr6:43399374(+) A-I      intronic chr6:43398578(+) A-I      intronic chr6:43397224(+) A-I      intronic chr6:43398540(+) A-I      intronic chr6:43407581(+) A-I      intronic chr6:43399361(+) A-I      intronic chr6:43397499(+) A-I      intronic chr6:43398601(+) A-I      intronic chr6:43407505(+) A-I      intronic chr6:43407354(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ABCC10	chr6:43397401(+) A-I intron -    22327324 chr6:43397439(+) A-I intron -    22327324 chr6:43397554(+) A-I intron -    22327324 chr6:43397610(+) A-I intron -    22327324 chr6:43397627(+) A-I intron -    22327324 chr6:43397635(+) A-I intron -    22327324 chr6:43397661(+) A-I intron -    22327324 chr6:43397890(+) A-I intron -    22327324 chr6:43397909(+) A-I intron -    22327324 chr6:43398034(+) A-I intron -    22327324 chr6:43398535(+) A-I intron -    22327324 chr6:43397401(+) A-G intron -    22484847 chr6:43397439(+) A-G intron -    22484847 chr6:43397482(+) A-G intron -    22484847 chr6:43397498(+) A-G intron -    22484847 chr6:43397499(+) A-G intron -    22484847 chr6:43397529(+) A-G intron -    22484847 chr6:43397554(+) A-G intron -    22484847 chr6:43397555(+) A-G intron -    22484847 chr6:43397610(+) A-G intron -    22484847 chr6:43397627(+) A-G intron -    22484847 chr6:43397635(+) A-G intron -    22484847 chr6:43397661(+) A-G intron -    22484847 chr6:43397708(+) A-G intron -    22484847 chr6:43397780(+) A-G intron -    22484847 chr6:43397860(+) A-G intron -    22484847 chr6:43397890(+) A-G intron -    22484847 chr6:43397903(+) A-G intron -    22484847 chr6:43397909(+) A-G intron -    22484847 chr6:43397915(+) A-G intron -    22484847 chr6:43397994(+) A-G intron -    22484847 chr6:43398026(+) A-G intron -    22484847 chr6:43398034(+) A-G intron -    22484847 chr6:43398090(+) A-G intron -    22484847 chr6:43398103(+) A-G intron -    22484847 chr6:43398486(+) A-G intron -    22484847 chr6:43398530(+) A-G intron -    22484847 chr6:43398540(+) A-G intron -    22484847 chr6:43398541(+) A-G intron -    22484847 chr6:43398560(+) A-G intron -    22484847 chr6:43398561(+) A-G intron -    22484847 chr6:43398578(+) A-G intron -    22484847 chr6:43398587(+) A-G intron -    22484847 chr6:43398659(+) A-G intron -    22484847 chr6:43398682(+) A-G intron -    22484847 chr6:43409954(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ABCC10	chr6:43395483-43395484(+) m6A 5'UTR//intron       24981863 chr6:43395627-43395628(+) m6A exon//intron       24981863 chr6:43395635-43395636(+) m6A exon//intron       24981863 chr6:43399965-43399966(+) m6A CDS//intron       24981863 chr6:43400005-43400006(+) m6A CDS//intron       24981863 chr6:43400299-43400300(+) m6A CDS//intron       24284625//25456834//24981863//22575960//22608085 chr6:43400308-43400309(+) m6A CDS//intron       24284625//25456834//24981863//22575960//22608085 chr6:43400347-43400348(+) m6A CDS//intron       24284625//25456834//24981863//22575960//22608085 chr6:43400361-43400362(+) Am CDS//intron       - chr6:43400454-43400455(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr6:43400476-43400477(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr6:43400584-43400585(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr6:43400603-43400604(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr6:43400799-43400800(+) m6A CDS//intron       24284625//25456834//24981863//22608085 chr6:43400862-43400863(+) m6A CDS//intron       24284625//25456834//24981863//22608085 chr6:43402608-43402609(+) m6A exon//intron       22608085 chr6:43402623-43402624(+) m6A exon//intron       22608085 chr6:43402640-43402641(+) m6A exon//intron       25456834//24981863//22608085 chr6:43402717-43402718(+) m6A exon//intron       25456834//24981863//22608085 chr6:43402726-43402727(+) m6A exon//intron       25456834//24981863//22608085 chr6:43411671-43411672(+) m6A CDS//exon       - chr6:43411731-43411732(+) m6A CDS//exon       - chr6:43411917-43411918(+) m6A CDS//exon       - chr6:43411928-43411929(+) m6A CDS//exon       - chr6:43413382-43413383(+) m6A CDS//exon//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ABCC10	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-3p
Interactor2: ABCC10

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg