Detail Information

Basic Information:


  VIRBase ID:  

VHID00094530

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-3p:           UACA:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H5-3p UACA
miRBase
Accession/Entrez ID		 MIMAT0008403 55075
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - NUCLING

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR UACA
chr15:70967119(-) A-I      intronic
chr15:71051389(-) A-I      intronic
chr15:71051390(-) A-I      intronic
chr15:71051810(-) A-I      intronic
chr15:71051866(-) A-I      intronic
chr15:70975646(-) A-I      intronic
chr15:70967132(-) A-I      intronic
chr15:71051391(-) A-I      intronic
chr15:70965564(-) A-I      intronic
chr15:71048634(-) A-I      intronic
chr15:70967000(-) A-I      intronic
chr15:71048772(-) A-I      intronic
chr15:70965213(-) A-I      intronic
chr15:71051430(-) A-I      intronic
chr15:70965217(-) A-I      intronic
chr15:70965254(-) A-I      intronic
chr15:70965271(-) A-I      intronic
chr15:70965576(-) A-I      intronic
chr15:71028911(-) A-I      intronic
chr15:70965359(-) A-I      intronic
chr15:71048631(-) A-I      intronic
chr15:71037769(-) A-I      intronic
chr15:70965561(-) A-I      intronic
chr15:70966297(-) A-I      intronic
chr15:71049042(-) A-I      intronic
chr15:71015659(-) A-I      intronic
chr15:70967051(-) A-I      intronic
chr15:70984646(-) A-I      intronic
chr15:71029829(-) A-I      intronic
chr15:70967075(-) A-I      intronic
chr15:70984775(-) A-I      intronic
chr15:70967106(-) A-I      intronic
chr15:70984985(-) A-I      intronic
chr15:71009474(-) A-I      intronic
chr15:71051792(-) A-I      intronic
chr15:71009477(-) A-I      intronic
chr15:71009497(-) A-I      intronic
chr15:71039847(-) A-I      intronic
chr15:71048986(-) A-I      intronic
chr15:70967101(-) A-I      intronic
chr15:70965053(-) A-I      intronic
chr15:71048627(-) A-I      intronic
chr15:70967107(-) A-I      intronic
chr15:71051255(-) A-I      intronic
chr15:71048995(-) A-I      intronic
chr15:70967110(-) A-I      intronic
chr15:70967164(-) A-I      intronic
chr15:71005640(-) A-I      intronic
chr15:71009555(-) A-I      intronic
chr15:71016104(-) A-I      intronic
chr15:71028841(-) A-I      intronic
chr15:70985077(-) A-I      intronic
chr15:71028852(-) A-I      intronic
chr15:70967187(-) A-I      intronic
chr15:70967233(-) A-I      intronic
chr15:70965600(-) A-I      intronic
chr15:70965155(-) A-I      intronic
chr15:71028880(-) A-I      intronic
chr15:71028881(-) A-I      intronic
chr15:70975503(-) A-I      intronic
chr15:70984542(-) A-I      intronic
chr15:71051379(-) A-I      intronic
chr15:71051396(-) A-I      intronic
chr15:71051432(-) A-I      intronic
chr15:70997651(-) A-I      intronic
chr15:71051931(-) A-I      intronic
chr15:71051907(-) A-I      intronic
chr15:70985026(-) A-I      intronic
chr15:71051856(-) A-I      intronic
chr15:70965372(-) A-I      intronic
chr15:70967170(-) A-I      intronic
chr15:70965608(-) A-I      intronic
chr15:70984865(-) A-I      intronic
chr15:71051885(-) A-I      intronic
chr15:70965568(-) A-I      intronic
chr15:70965429(-) A-I      intronic
chr15:70957835(-) A-I      intronic
chr15:70965080(-) A-I      intronic
chr15:71014824(-) A-I      intronic
chr15:71051908(-) A-I      intronic
chr15:70965081(-) A-I      intronic
chr15:70965118(-) A-I      intronic
chr15:70947771(-) A-I      3'UTR
chr15:70947731(-) A-I      3'UTR
chr15:70947705(-) A-I      3'UTR
chr15:70947794(-) A-I      3'UTR
chr15:70947632(-) A-I      3'UTR
chr15:71016243(-) A-I      intronic
chr15:71051307(-) A-I      intronic
chr15:70985102(-) A-I      intronic
chr15:70984886(-) A-I      intronic
chr15:71052001(-) A-I      intronic
chr15:70966239(-) A-I      intronic
chr15:70965159(-) A-I      intronic
chr15:70966312(-) A-I      intronic
chr15:71012762(-) A-I      intronic
chr15:71051317(-) A-I      intronic
chr15:71053070(-) A-I      intronic
chr15:70984943(-) A-I      intronic
chr15:71048676(-) A-I      intronic
chr15:71014821(-) A-I      intronic
chr15:71051829(-) A-I      intronic
chr15:70965605(-) A-I      intronic
chr15:71028117(-) A-I      intronic
chr15:70975576(-) A-I      intronic
chr15:70966253(-) A-I      intronic
chr15:71052009(-) A-I      intronic
chr15:71047843(-) A-I      intronic
chr15:71051368(-) A-I      intronic
chr15:70984797(-) A-I      intronic
chr15:71028885(-) A-I      intronic
chr15:71048679(-) A-I      intronic
chr15:71051832(-) A-I      intronic
chr15:71014881(-) A-I      intronic
chr15:71051402(-) A-I      intronic
chr15:70984609(-) A-I      intronic
chr15:70965428(-) A-I      intronic
chr15:70984774(-) A-I      intronic
chr15:71039837(-) A-I      intronic
chr15:71005625(-) A-I      intronic
chr15:70967012(-) A-I      intronic
chr15:70984641(-) A-I      intronic
chr15:70965177(-) A-I      intronic
chr15:71046382(-) A-I      intronic
chr15:70967098(-) A-I      intronic
chr15:71012754(-) A-I      intronic
chr15:70965063(-) A-I      intronic
chr15:70984720(-) A-I      intronic
chr15:70965518(-) A-I      intronic
chr15:70984926(-) A-I      intronic
chr15:70965352(-) A-I      intronic
chr15:71012707(-) A-I      intronic
chr15:71048696(-) A-I      intronic
chr15:71048603(-) A-I      intronic
chr15:71005630(-) A-I      intronic
chr15:70965531(-) A-I      intronic
chr15:70967113(-) A-I      intronic
chr15:71052005(-) A-I      intronic
chr15:71043065(-) A-I      intronic
chr15:70984729(-) A-I      intronic
chr15:70984621(-) A-I      intronic
chr15:71014767(-) A-I      intronic
chr15:71051790(-) A-I      intronic
chr15:70966276(-) A-I      intronic
chr15:70965041(-) A-I      intronic
chr15:71051384(-) A-I      intronic
chr15:71015629(-) A-I      intronic
chr15:71043140(-) A-I      intronic
chr15:71037767(-) A-I      intronic
chr15:70967169(-) A-I      intronic
chr15:70965131(-) A-I      intronic
chr15:70947688(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED UACA
chr15:70984641(-) A-I intron -    21960545
chr15:70984926(-) A-I intron -    21960545
chr15:70985026(-) A-I intron -    21960545
chr15:71043140(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase UACA
chr15:70947024-70947025(-) m6A 3'UTR       24981863//27773535
chr15:70947126-70947127(-) m6A 3'UTR       25456834//24981863//27773535//22608085
chr15:70947132-70947133(-) m6A 3'UTR       25456834//24981863//27773535//22608085
chr15:70947140-70947141(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960//22608085
chr15:70947175-70947176(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085
chr15:70947188-70947189(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085
chr15:70947197-70947198(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085
chr15:70947219-70947220(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085
chr15:70948767-70948768(-) m6A 3'UTR       27773535
chr15:70952512-70952513(-) m6A CDS//exon       27773535
chr15:70952543-70952544(-) m6A CDS//exon       27773535
chr15:70954023-70954024(-) m6A exon//intron       27773535
chr15:70957073-70957074(-) m6A CDS//exon       27773535//22608085
chr15:70957117-70957118(-) m6A CDS//exon       27773535//22608085
chr15:70957144-70957145(-) m6A CDS//exon       27773535//22608085
chr15:70959086-70959087(-) m6A CDS       27773535//22608085
chr15:70959310-70959311(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70959364-70959365(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr15:70959386-70959387(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr15:70959413-70959414(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr15:70959435-70959436(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr15:70959540-70959541(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70959569-70959570(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70959580-70959581(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70959620-70959621(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70959677-70959678(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70959695-70959696(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70959737-70959738(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70959801-70959802(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr15:70959812-70959813(-) m6A CDS       24284625//27371828//22608085
chr15:70959816-70959817(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70959829-70959830(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70959880-70959881(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70959945-70959946(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70959985-70959986(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70960002-70960003(-) m6A CDS       24981863//27773535//22608085
chr15:70960010-70960011(-) m6A CDS       24981863//27773535//22608085
chr15:70960275-70960276(-) m6A CDS       24981863//27773535//22608085
chr15:70960284-70960285(-) m6A CDS       24981863//27773535//22608085
chr15:70960293-70960294(-) m6A CDS       24981863//27773535//22608085
chr15:70960387-70960388(-) m6A CDS       24981863//27773535//22608085
chr15:70960432-70960433(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70960479-70960480(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70960512-70960513(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr15:70960535-70960536(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr15:70960547-70960548(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr15:70960556-70960557(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr15:70960598-70960599(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr15:70960621-70960622(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr15:70960767-70960768(-) m6A CDS       24981863//27773535//22608085
chr15:70960882-70960883(-) m6A CDS       24981863//27773535//22608085
chr15:70960922-70960923(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70960937-70960938(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70960958-70960959(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70960964-70960965(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70960973-70960974(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70961012-70961013(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70961027-70961028(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70961054-70961055(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70961121-70961122(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:70961240-70961241(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr15:70961318-70961319(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr15:70961328-70961329(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr15:70961379-70961380(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr15:70961399-70961400(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr15:70961411-70961412(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr15:70961447-70961448(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr15:70961470-70961471(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr15:70961480-70961481(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr15:70961552-70961553(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr15:70961624-70961625(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr15:70961646-70961647(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr15:70961651-70961652(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr15:70961671-70961672(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr15:70961741-70961742(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr15:70961750-70961751(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr15:70963384-70963385(-) m6A CDS//exon       24284625//27773535//22608085
chr15:70963407-70963408(-) m6A CDS//exon       24284625//27773535
chr15:70968766-70968767(-) m6A exon//intron       27773535
chr15:70968869-70968870(-) m6A CDS//exon       24981863//27773535
chr15:70970488-70970489(-) m6A CDS//exon       24981863//27773535
chr15:70979975-70979976(-) m6A CDS//exon//intron       27773535
chr15:70994219-70994220(-) m6A CDS//intron       24981863
chr15:70994246-70994247(-) m6A CDS//intron       -
chr15:70994267-70994268(-) m6A 5'UTR//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate UACA
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleus HCC cell line (HepG2)     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H5-3p
Interactor2: UACA

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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