Detail Information

Basic Information:


  VIRBase ID:  

VHID00094040

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-3p:           SMG5:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H5-3p SMG5
miRBase
Accession/Entrez ID		 MIMAT0008403 23381
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - EST1B//LPTS-RP1//LPTSRP1//SMG-5

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SMG5
chr1:156242532(-) A-I      intronic
chr1:156224367(-) A-I      intronic
chr1:156224346(-) A-I      intronic
chr1:156224306(-) A-I      intronic
chr1:156242546(-) A-I      intronic
chr1:156242547(-) A-I      intronic
chr1:156242540(-) A-I      intronic
chr1:156242539(-) A-I      intronic
chr1:156242536(-) A-I      intronic
chr1:156242548(-) A-I      intronic
chr1:156242524(-) A-I      intronic
chr1:156224448(-) A-I      intronic
chr1:156224430(-) A-I      intronic
chr1:156224413(-) A-I      intronic
chr1:156224404(-) A-I      intronic
chr1:156224403(-) A-I      intronic
chr1:156224438(-) A-I      intronic
chr1:156240636(-) A-I      intronic
chr1:156224478(-) A-I      intronic
chr1:156224698(-) A-I      intronic
chr1:156224741(-) A-I      intronic
chr1:156225167(-) A-I      intronic
chr1:156240555(-) A-I      intronic
chr1:156225642(-) A-I      intronic
chr1:156239768(-) A-I      intronic
chr1:156225668(-) A-I      intronic
chr1:156240631(-) A-I      intronic
chr1:156231598(-) A-I      intronic
chr1:156239708(-) A-I      intronic
chr1:156226794(-) A-I      intronic
chr1:156240595(-) A-I      intronic
chr1:156239517(-) A-I      intronic
chr1:156226820(-) A-I      intronic
chr1:156226834(-) A-I      intronic
chr1:156226866(-) A-I      intronic
chr1:156226897(-) A-I      intronic
chr1:156226900(-) A-I      intronic
chr1:156239424(-) A-I      intronic
chr1:156226911(-) A-I      intronic
chr1:156240650(-) A-I      intronic
chr1:156231581(-) A-I      intronic
chr1:156239422(-) A-I      intronic
chr1:156240582(-) A-I      intronic
chr1:156239346(-) A-I      intronic
chr1:156240633(-) A-I      intronic
chr1:156243586(-) A-I      intronic
chr1:156240594(-) A-I      intronic
chr1:156241450(-) A-I      intronic
chr1:156239477(-) A-I      intronic
chr1:156240682(-) A-I      intronic
chr1:156241531(-) A-I      intronic
chr1:156241512(-) A-I      intronic
chr1:156239074(-) A-I      intronic
chr1:156224718(-) A-I      intronic
chr1:156224806(-) A-I      intronic
chr1:156239603(-) A-I      intronic
chr1:156224417(-) A-I      intronic
chr1:156242542(-) A-I      intronic
chr1:156224509(-) A-I      intronic
chr1:156239709(-) A-I      intronic
chr1:156224508(-) A-I      intronic
chr1:156250361(-) A-I      intronic
chr1:156224314(-) A-I      intronic
chr1:156224264(-) A-I      intronic
chr1:156242628(-) A-I      intronic
chr1:156239105(-) A-I      intronic
chr1:156224332(-) A-I      intronic
chr1:156226814(-) A-I      intronic
chr1:156228577(-) A-I      intronic
chr1:156239604(-) A-I      intronic
chr1:156225508(-) A-I      intronic
chr1:156239719(-) A-I      intronic
chr1:156239731(-) A-I      intronic
chr1:156242503(-) A-I      intronic
chr1:156224399(-) A-I      intronic
chr1:156239774(-) A-I      intronic
chr1:156226747(-) A-I      intronic
chr1:156239554(-) A-I      intronic
chr1:156239304(-) A-I      intronic
chr1:156225208(-) A-I      intronic
chr1:156225612(-) A-I      intronic
chr1:156241521(-) A-I      intronic
chr1:156240759(-) A-I      intronic
chr1:156241540(-) A-I      intronic
chr1:156241670(-) A-I      intronic
chr1:156241656(-) A-I      intronic
chr1:156224846(-) A-I      intronic
chr1:156225467(-) A-I      intronic
chr1:156224646(-) A-I      intronic
chr1:156224373(-) A-I      intronic
chr1:156239343(-) A-I      intronic
chr1:156238834(-) A-I      intronic
chr1:156224428(-) A-I      intronic
chr1:156225611(-) A-I      intronic
chr1:156224737(-) A-I      intronic
chr1:156226993(-) A-I      intronic
chr1:156241457(-) A-I      intronic
chr1:156241577(-) A-I      intronic
chr1:156226982(-) A-I      intronic
chr1:156239036(-) A-I      intronic
chr1:156226884(-) A-I      intronic
chr1:156224412(-) A-I      intronic
chr1:156239178(-) A-I      intronic
chr1:156226716(-) A-I      intronic
chr1:156228344(-) A-I      intronic
chr1:156224311(-) A-I      intronic
chr1:156239071(-) A-I      intronic
chr1:156224363(-) A-I      intronic
chr1:156240577(-) A-I      intronic
chr1:156226728(-) A-I      intronic
chr1:156224825(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SMG5
chr1:156224311(-) A-G intron -    22484847
chr1:156224332(-) A-G intron -    22484847
chr1:156224399(-) A-G intron -    22484847
chr1:156224428(-) A-G intron -    22484847
chr1:156224646(-) A-G intron -    22484847
chr1:156224737(-) A-G intron -    22484847
chr1:156224846(-) A-G intron -    22484847
chr1:156225208(-) A-G intron -    22484847
chr1:156225611(-) A-G intron -    22484847
chr1:156225612(-) A-G intron -    22484847
chr1:156239036(-) A-G intron -    22484847
chr1:156239071(-) A-G intron -    22484847
chr1:156239304(-) A-G intron -    22484847
chr1:156239477(-) A-G intron -    22484847
chr1:156239554(-) A-G intron -    22484847
chr1:156239719(-) A-G intron -    22484847
chr1:156240594(-) A-G intron -    22484847
chr1:156240633(-) A-G intron -    22484847
chr1:156240759(-) A-G intron -    22484847
chr1:156241450(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SMG5
chr1:156219028-156219029(-) m6A 3'UTR       24284625//24981863//27773535//27371828//22608085
chr1:156219048-156219049(-) m6A 3'UTR       24284625//24981863//27773535//27371828//22608085
chr1:156219054-156219055(-) m6A 3'UTR       24284625//24981863//27773535//27371828//22608085
chr1:156219389-156219390(-) m6A 3'UTR       24284625//27773535//27773536
chr1:156219396-156219397(-) m6A 3'UTR       24284625//27773535//27773536
chr1:156219489-156219490(-) m6A 3'UTR       27773535//27773536
chr1:156219571-156219572(-) m6A 3'UTR       -
chr1:156220279-156220280(-) m6A 3'UTR//exon       25456834//24981863//27773535//27371828//22575960
chr1:156220311-156220312(-) m6A 3'UTR//exon       25456834//24981863//27773535//27371828//22575960
chr1:156220408-156220409(-) m6A CDS//exon       27371828
chr1:156220426-156220427(-) m6A CDS//exon       27371828
chr1:156222207-156222208(-) m6A CDS//exon       24981863
chr1:156222263-156222264(-) m6A CDS//exon       -
chr1:156223261-156223262(-) m6A CDS//exon       27773536
chr1:156223276-156223277(-) m6A CDS//exon       27773536
chr1:156230332-156230333(-) m6A CDS       27773535
chr1:156230370-156230371(-) m6A CDS       27773535
chr1:156235588-156235589(-) m6A CDS       24284625
chr1:156235697-156235698(-) m6A CDS       24284625//27773535//27773536
chr1:156235826-156235827(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:156235841-156235842(-) Gm CDS       -
chr1:156235855-156235856(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:156235892-156235893(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:156235945-156235946(-) m6A CDS//exon       24284625//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr1:156235984-156235985(-) m6A CDS//exon       24284625//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:156236151-156236152(-) m6A CDS//exon       24284625//27773535//22575960
chr1:156236166-156236167(-) m6A CDS//exon       24284625//27773535//22575960
chr1:156237322-156237323(-) m6A CDS//exon       24284625
chr1:156252481-156252482(-) m6A 5'UTR       24284625//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SMG5
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H5-3p
Interactor2: SMG5

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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