Basic Information:

  VIRBase ID:  

VHID00093972

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-3p:  MIMAT0008403          GPD1L:  NM_015141     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-3p	GPD1L
miRBase Accession/Entrez ID	MIMAT0008403	23171
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GPD1-L

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GPD1L	chr3:32192327(+) A-I      intronic chr3:32193206(+) A-I      intronic chr3:32193247(+) A-I      intronic chr3:32206553(+) A-I      intronic chr3:32190577(+) A-I      intronic chr3:32206540(+) A-I      intronic chr3:32153969(+) A-I      intronic chr3:32161562(+) A-I      intronic chr3:32161645(+) A-I      intronic chr3:32161716(+) A-I      intronic chr3:32165675(+) A-I      intronic chr3:32176215(+) A-I      intronic chr3:32184542(+) A-I      intronic chr3:32184572(+) A-I      intronic chr3:32190815(+) A-I      intronic chr3:32190827(+) A-I      intronic chr3:32190845(+) A-I      intronic chr3:32191184(+) A-I      intronic chr3:32191279(+) A-I      intronic chr3:32191285(+) A-I      intronic chr3:32191291(+) A-I      intronic chr3:32191320(+) A-I      intronic chr3:32191373(+) A-I      intronic chr3:32191390(+) A-I      intronic chr3:32192118(+) A-I      intronic chr3:32192281(+) A-I      intronic chr3:32192282(+) A-I      intronic chr3:32192284(+) A-I      intronic chr3:32186362(+) A-I      intronic chr3:32190717(+) A-I      intronic chr3:32190775(+) A-I      intronic chr3:32198761(+) A-I      intronic chr3:32193171(+) A-I      intronic chr3:32190814(+) A-I      intronic chr3:32153945(+) A-I      intronic chr3:32157322(+) A-I      intronic chr3:32190576(+) A-I      intronic chr3:32192444(+) A-I      intronic chr3:32193239(+) A-I      intronic chr3:32193192(+) A-I      intronic chr3:32191185(+) A-I      intronic chr3:32186252(+) A-I      intronic chr3:32192168(+) A-I      intronic chr3:32204350(+) A-I      intronic chr3:32153936(+) A-I      intronic chr3:32206443(+) A-I      intronic chr3:32192534(+) A-I      intronic chr3:32190616(+) A-I      intronic chr3:32190681(+) A-I      intronic chr3:32192428(+) A-I      intronic chr3:32192096(+) A-I      intronic chr3:32190691(+) A-I      intronic chr3:32193102(+) A-I      intronic chr3:32192089(+) A-I      intronic chr3:32193111(+) A-I      intronic chr3:32192078(+) A-I      intronic chr3:32190615(+) A-I      intronic chr3:32204434(+) A-I      intronic chr3:32206442(+) A-I      intronic chr3:32206582(+) A-I      intronic chr3:32204412(+) A-I      intronic chr3:32191263(+) A-I      intronic chr3:32206459(+) A-I      intronic chr3:32190632(+) A-I      intronic chr3:32191206(+) A-I      intronic chr3:32193186(+) A-I      intronic chr3:32204530(+) A-I      intronic chr3:32192048(+) A-I      intronic chr3:32191361(+) A-I      intronic chr3:32192437(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GPD1L	chr3:32191294(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GPD1L	chr3:32148141-32148142(+) m6A 5'UTR//intron       24209618//24981863 chr3:32148246-32148247(+) m6A 5'UTR//CDS//intron       24209618//24981863 chr3:32201116-32201117(+) m6A CDS//exon       - chr3:32201145-32201146(+) m6A CDS//exon       - chr3:32201154-32201155(+) m6A CDS//exon       - chr3:32201162-32201163(+) m6A CDS//exon       - chr3:32207468-32207469(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr3:32207474-32207475(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr3:32207591-32207592(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr3:32207603-32207604(+) m6A 3'UTR//exon       24284625//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GPD1L	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus HeLa-S3 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-3p
Interactor2: GPD1L

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg