Basic Information:

  VIRBase ID:  

VHID00093481

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-3p:  MIMAT0008403          CRIPT:  NM_014171     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-3p	CRIPT
miRBase Accession/Entrez ID	MIMAT0008403	9419
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HSPC139//SSMDF

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CRIPT	chr2:46852400(+) A-I      3'UTR chr2:46852390(+) A-I      3'UTR chr2:46852393(+) A-I      3'UTR chr2:46852384(+) A-I      3'UTR chr2:46849302(+) A-I      intronic chr2:46847425(+) A-I      intronic chr2:46847436(+) A-I      intronic chr2:46852377(+) A-I      3'UTR chr2:46852420(+) A-I      3'UTR chr2:46852340(+) A-I      3'UTR chr2:46852336(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CRIPT	chr2:46844405-46844406(+) m6A 5'UTR//intron       24209618//24981863 chr2:46845921-46845922(+) m6A CDS//exon       24209618//24981863 chr2:46852113-46852114(+) m6A 3'UTR//exon       24981863 chr2:46852118-46852119(+) m6A 3'UTR//exon       24981863 chr2:46852177-46852178(+) m6A 3'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CRIPT	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-3p
Interactor2: CRIPT

Evidence Support:

Prediction-Evidence	cRep//Targetscan
Support Database	RepTar//VmiReg