Basic Information:

  VIRBase ID:  

VHID00093178

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-3p:  MIMAT0008403          THBS1:  NM_003246     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-3p	THBS1
miRBase Accession/Entrez ID	MIMAT0008403	7057
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	THBS//THBS-1//TSP//TSP-1//TSP1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	THBS1	chr15:39874657-39874658(+) m6A CDS       22575960 chr15:39874711-39874712(+) m6A CDS       22575960 chr15:39874813-39874814(+) m6A CDS       24284625//22575960 chr15:39874894-39874895(+) m6A CDS       24284625 chr15:39874913-39874914(+) m6A CDS       24284625 chr15:39875850-39875851(+) m6A CDS       24284625 chr15:39875863-39875864(+) m6A CDS       24284625 chr15:39875875-39875876(+) m6A CDS       24284625 chr15:39876271-39876272(+) m6A CDS       24284625 chr15:39876278-39876279(+) m6A CDS       24284625 chr15:39876333-39876334(+) m6A CDS       24284625 chr15:39876371-39876372(+) m6A CDS       24284625 chr15:39876510-39876511(+) m6A CDS       24284625 chr15:39876590-39876591(+) m6A CDS       24284625 chr15:39878867-39878868(+) m6A intron       - chr15:39878944-39878945(+) m6A intron       - chr15:39878986-39878987(+) m6A intron       - chr15:39879684-39879685(+) m6A CDS//exon       22575960 chr15:39879690-39879691(+) m6A CDS//exon       22575960 chr15:39880246-39880247(+) m6A CDS//exon       22575960 chr15:39881457-39881458(+) m6A CDS//exon       24284625 chr15:39881463-39881464(+) m6A CDS//exon       24284625 chr15:39881533-39881534(+) m6A CDS//exon       24284625 chr15:39881551-39881552(+) m6A CDS//exon       24284625 chr15:39882038-39882039(+) m6A CDS//exon       24284625 chr15:39882153-39882154(+) m6A CDS       24284625//22575960 chr15:39882159-39882160(+) m6A CDS       24284625//22575960 chr15:39882183-39882184(+) m6A CDS       24284625 chr15:39882753-39882754(+) m6A CDS       24284625 chr15:39883150-39883151(+) m6A exon//intron       24284625 chr15:39883354-39883355(+) m6A exon//intron       24284625 chr15:39883392-39883393(+) m6A CDS//exon       24284625 chr15:39883452-39883453(+) m6A CDS//exon       24284625//22575960 chr15:39883497-39883498(+) m6A CDS//exon       24284625//22575960 chr15:39883503-39883504(+) m6A CDS//exon       24284625//22575960 chr15:39883536-39883537(+) m6A CDS//exon       24284625//26404942//22575960 chr15:39883723-39883724(+) m6A CDS//exon       24284625//26404942//22575960 chr15:39883750-39883751(+) m6A CDS//exon       24284625//22575960 chr15:39883759-39883760(+) m6A CDS//exon       24284625//22575960 chr15:39883808-39883809(+) m6A CDS//exon       24284625//22575960 chr15:39884772-39884773(+) m6A CDS       24284625//22575960 chr15:39884784-39884785(+) m6A CDS       24284625 chr15:39884841-39884842(+) m6A CDS       24284625//24981863 chr15:39884850-39884851(+) m6A CDS       24284625//24981863//26404942 chr15:39884958-39884959(+) m6A CDS       26404942 chr15:39884968-39884969(+) m6A CDS       26404942 chr15:39884994-39884995(+) m6A CDS       26404942 chr15:39886543-39886544(+) m6A CDS//exon       24209618 chr15:39886559-39886560(+) m6A CDS//exon       24284625//24209618//24981863 chr15:39886576-39886577(+) m6A CDS//exon       24284625//24209618//24981863 chr15:39887592-39887593(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//22575960 chr15:39887603-39887604(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//22575960 chr15:39887630-39887631(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960 chr15:39887647-39887648(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960 chr15:39887703-39887704(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960 chr15:39887749-39887750(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960 chr15:39887781-39887782(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr15:39887800-39887801(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr15:39887919-39887920(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960 chr15:39887956-39887957(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960 chr15:39887974-39887975(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960 chr15:39887979-39887980(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960 chr15:39888004-39888005(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960 chr15:39888079-39888080(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960 chr15:39888123-39888124(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960 chr15:39888207-39888208(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960 chr15:39888213-39888214(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960 chr15:39888225-39888226(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960 chr15:39888291-39888292(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960 chr15:39888391-39888392(+) m6A 3'UTR       24284625//24209618 chr15:39888638-39888639(+) m6A 3'UTR       24981863 chr15:39888656-39888657(+) m6A 3'UTR       24981863 chr15:39890382-39890383(+) m6A 3'UTR       24981863 chr15:39890750-39890751(+) m6A 3'UTR       24981863 chr15:39890774-39890775(+) m6A 3'UTR       24981863 chr15:39890835-39890836(+) m6A 3'UTR       24981863 chr15:39890873-39890874(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	THBS1	Cytosol HeLa-S3 cells     - Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-3p
Interactor2: THBS1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg