Basic Information:

  VIRBase ID:  

VHID00092712

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-3p:  MIMAT0008403          LAMP1:  NM_005561     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-3p	LAMP1
miRBase Accession/Entrez ID	MIMAT0008403	3916
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CD107a//LAMPA//LGP120

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LAMP1	chr13:113954722(+) A-I      intronic chr13:113956271(+) A-I      intronic chr13:113955834(+) A-I      intronic chr13:113955775(+) A-I      intronic chr13:113956425(+) A-I      intronic chr13:113954713(+) A-I      intronic chr13:113962751(+) A-I      intronic chr13:113959137(+) A-I      intronic chr13:113956710(+) A-I      intronic chr13:113956398(+) A-I      intronic chr13:113953983(+) A-I      intronic chr13:113954631(+) A-I      intronic chr13:113953817(+) A-I      intronic chr13:113954634(+) A-I      intronic chr13:113956387(+) A-I      intronic chr13:113954792(+) A-I      intronic chr13:113954010(+) A-I      intronic chr13:113954013(+) A-I      intronic chr13:113954140(+) A-I      intronic chr13:113954600(+) A-I      intronic chr13:113954001(+) A-I      intronic chr13:113970339(+) A-I      intronic chr13:113954020(+) A-I      intronic chr13:113954690(+) A-I      intronic chr13:113953302(+) A-I      intronic chr13:113954707(+) A-I      intronic chr13:113953754(+) A-I      intronic chr13:113953334(+) A-I      intronic chr13:113954867(+) A-I      intronic chr13:113960541(+) A-I      intronic chr13:113955002(+) A-I      intronic chr13:113956676(+) A-I      intronic chr13:113955061(+) A-I      intronic chr13:113956599(+) A-I      intronic chr13:113959111(+) A-I      intronic chr13:113953303(+) A-I      intronic chr13:113956688(+) A-I      intronic chr13:113953279(+) A-I      intronic chr13:113955833(+) A-I      intronic chr13:113958181(+) A-I      intronic chr13:113955680(+) A-I      intronic chr13:113963509(+) A-I      intronic chr13:113956440(+) A-I      intronic chr13:113955026(+) A-I      intronic chr13:113954905(+) A-I      intronic chr13:113970400(+) A-I      intronic chr13:113953297(+) A-I      intronic chr13:113961294(+) A-I      intronic chr13:113954618(+) A-I      intronic chr13:113953384(+) A-I      intronic chr13:113954064(+) A-I      intronic chr13:113954081(+) A-I      intronic chr13:113954067(+) A-I      intronic chr13:113957535(+) A-I      intronic chr13:113953400(+) A-I      intronic chr13:113969944(+) A-I      intronic chr13:113954680(+) A-I      intronic chr13:113959072(+) A-I      intronic chr13:113956702(+) A-I      intronic chr13:113953308(+) A-I      intronic chr13:113956366(+) A-I      intronic chr13:113969903(+) A-I      intronic chr13:113956569(+) A-I      intronic chr13:113956525(+) A-I      intronic chr13:113959036(+) A-I      intronic chr13:113961284(+) A-I      intronic chr13:113959138(+) A-I      intronic chr13:113953750(+) A-I      intronic chr13:113954911(+) A-I      intronic chr13:113953984(+) A-I      intronic chr13:113953246(+) A-I      intronic chr13:113953295(+) A-I      intronic chr13:113955817(+) A-I      intronic chr13:113956282(+) A-I      intronic chr13:113955765(+) A-I      intronic chr13:113959169(+) A-I      intronic chr13:113970154(+) A-I      intronic chr13:113954645(+) A-I      intronic chr13:113955858(+) A-I      intronic chr13:113956739(+) A-I      intronic chr13:113955827(+) A-I      intronic chr13:113955687(+) A-I      intronic chr13:113954635(+) A-I      intronic chr13:113972135(+) A-I      intronic chr13:113960551(+) A-I      intronic chr13:113953763(+) A-I      intronic chr13:113956719(+) A-I      intronic chr13:113956600(+) A-I      intronic chr13:113953684(+) A-I      intronic chr13:113953363(+) A-I      intronic chr13:113960593(+) A-I      intronic chr13:113958195(+) A-I      intronic chr13:113953335(+) A-I      intronic chr13:113958257(+) A-I      intronic chr13:113953364(+) A-I      intronic chr13:113954644(+) A-I      intronic chr13:113953299(+) A-I      intronic chr13:113953840(+) A-I      intronic chr13:113956978(+) A-I      intronic chr13:113956317(+) A-I      intronic chr13:113959035(+) A-I      intronic chr13:113953326(+) A-I      intronic chr13:113953209(+) A-I      intronic chr13:113954733(+) A-I      intronic chr13:113970208(+) A-I      intronic chr13:113970297(+) A-I      intronic chr13:113953291(+) A-I      intronic chr13:113954025(+) A-I      intronic chr13:113956757(+) A-I      intronic chr13:113958129(+) A-I      intronic chr13:113958272(+) A-I      intronic chr13:113953357(+) A-I      intronic chr13:113959101(+) A-I      intronic chr13:113959235(+) A-I      intronic chr13:113959155(+) A-I      intronic chr13:113961647(+) A-I      intronic chr13:113954540(+) A-I      intronic chr13:113959194(+) A-I      intronic chr13:113958994(+) A-I      intronic chr13:113953777(+) A-I      intronic chr13:113956406(+) A-I      intronic chr13:113953293(+) A-I      intronic chr13:113958279(+) A-I      intronic chr13:113955791(+) A-I      intronic chr13:113955108(+) A-I      intronic chr13:113970271(+) A-I      intronic chr13:113954023(+) A-I      intronic chr13:113969871(+) A-I      intronic chr13:113969870(+) A-I      intronic chr13:113958144(+) A-I      intronic chr13:113954620(+) A-I      intronic chr13:113955850(+) A-I      intronic chr13:113956971(+) A-I      intronic chr13:113955012(+) A-I      intronic chr13:113955572(+) A-I      intronic chr13:113955074(+) A-I      intronic chr13:113954681(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	LAMP1	chr13:113975718(+) G-A exon CDS    21725310 chr13:113969870(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LAMP1	chr13:113965031-113965032(+) m6A CDS//exon       26404942//27773535 chr13:113965110-113965111(+) m6A CDS//exon       26404942 chr13:113973785-113973786(+) m6A CDS//exon       26404942 chr13:113973796-113973797(+) m6A CDS//exon       26404942 chr13:113973801-113973802(+) m6A CDS//exon       26404942 chr13:113973879-113973880(+) m6A CDS//exon       22575960 chr13:113973908-113973909(+) m6A CDS//exon       22575960 chr13:113973942-113973943(+) m6A CDS//exon       22575960 chr13:113973953-113973954(+) Gm CDS//exon       - chr13:113973963-113973964(+) m6A CDS//exon       22575960 chr13:113974695-113974696(+) m6A CDS//exon       - chr13:113975270-113975271(+) m6A exon//intron       24981863 chr13:113975295-113975296(+) m6A exon//intron       24981863 chr13:113976727-113976728(+) m6A CDS//exon       22575960 chr13:113977376-113977377(+) m6A 3'UTR//exon       - chr13:113977386-113977387(+) m6A 3'UTR//exon       - chr13:113977394-113977395(+) m6A 3'UTR//exon       - chr13:113977633-113977634(+) Gm 3'UTR//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LAMP1	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-3p
Interactor2: LAMP1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg