Basic Information:

  VIRBase ID:  

VHID00092052

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-3p:  MIMAT0008402          SNX30:  NM_001012994     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H4-3p	SNX30
miRBase Accession/Entrez ID	MIMAT0008402	401548
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ATG24A

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SNX30	chr9:115533155(+) A-I      intronic chr9:115533115(+) A-I      intronic chr9:115532713(+) A-I      intronic chr9:115526678(+) A-I      intronic chr9:115614271(+) A-I      intronic chr9:115516886(+) A-I      intronic chr9:115614246(+) A-I      intronic chr9:115614244(+) A-I      intronic chr9:115521806(+) A-I      intronic chr9:115516866(+) A-I      intronic chr9:115532581(+) A-I      intronic chr9:115532593(+) A-I      intronic chr9:115521799(+) A-I      intronic chr9:115624919(+) A-I      intronic chr9:115533169(+) A-I      intronic chr9:115521380(+) A-I      intronic chr9:115532711(+) A-I      intronic chr9:115533165(+) A-I      intronic chr9:115514618(+) A-I      intronic chr9:115514778(+) A-I      intronic chr9:115515684(+) A-I      intronic chr9:115515877(+) A-I      intronic chr9:115614288(+) A-I      intronic chr9:115614287(+) A-I      intronic chr9:115614276(+) A-I      intronic chr9:115614274(+) A-I      intronic chr9:115614273(+) A-I      intronic chr9:115521995(+) A-I      intronic chr9:115525549(+) A-I      intronic chr9:115528267(+) A-I      intronic chr9:115516891(+) A-I      intronic chr9:115525764(+) A-I      intronic chr9:115528264(+) A-I      intronic chr9:115525554(+) A-I      intronic chr9:115526774(+) A-I      intronic chr9:115525702(+) A-I      intronic chr9:115520793(+) A-I      intronic chr9:115525876(+) A-I      intronic chr9:115521109(+) A-I      intronic chr9:115528258(+) A-I      intronic chr9:115574681(+) A-I      intronic chr9:115575342(+) A-I      intronic chr9:115532725(+) A-I      intronic chr9:115628079(+) A-I      intronic chr9:115516815(+) A-I      intronic chr9:115521203(+) A-I      intronic chr9:115575328(+) A-I      intronic chr9:115520885(+) A-I      intronic chr9:115521336(+) A-I      intronic chr9:115575849(+) A-I      intronic chr9:115540815(+) A-I      intronic chr9:115516869(+) A-I      intronic chr9:115532712(+) A-I      intronic chr9:115624986(+) A-I      intronic chr9:115514774(+) A-I      intronic chr9:115541917(+) A-I      intronic chr9:115520950(+) A-I      intronic chr9:115521355(+) A-I      intronic chr9:115525501(+) A-I      intronic chr9:115515744(+) A-I      intronic chr9:115516739(+) A-I      intronic chr9:115628088(+) A-I      intronic chr9:115520749(+) A-I      intronic chr9:115625121(+) A-I      intronic chr9:115541730(+) A-I      intronic chr9:115533259(+) A-I      intronic chr9:115520939(+) A-I      intronic chr9:115575392(+) A-I      intronic chr9:115516851(+) A-I      intronic chr9:115541832(+) A-I      intronic chr9:115548075(+) A-I      intronic chr9:115520859(+) A-I      intronic chr9:115514664(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SNX30	chr9:115598639-115598640(+) m6A CDS       24981863 chr9:115598646-115598647(+) m6A CDS       24981863 chr9:115600850-115600851(+) m6A CDS       24981863 chr9:115626659-115626660(+) m6A CDS//exon       24981863 chr9:115631107-115631108(+) m6A CDS//intron       24284625//24981863//22608085 chr9:115631143-115631144(+) m6A 3'UTR//intron       24284625//24981863//22608085 chr9:115631218-115631219(+) m6A 3'UTR//intron       24284625//24981863//22608085 chr9:115631230-115631231(+) m6A 3'UTR//intron       24284625//24981863//22608085 chr9:115631399-115631400(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr9:115631407-115631408(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr9:115631412-115631413(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr9:115631462-115631463(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr9:115631490-115631491(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr9:115631529-115631530(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr9:115631558-115631559(+) m6A 3'UTR//intron       25456834//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SNX30	Cytosol K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H4-3p
Interactor2: SNX30

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg