Basic Information:

  VIRBase ID:  

VHID00092012

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-3p:  MIMAT0008402          MIA3:  NM_001324065     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H4-3p	MIA3
miRBase Accession/Entrez ID	MIMAT0008402	375056
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ARNT//D320//TANGO//TANGO1//UNQ6077

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	MIA3	chr1:222811263(+) A-I      intronic chr1:222811064(+) A-I      intronic chr1:222804517(+) A-I      intronic chr1:222807569(+) A-I      intronic chr1:222811783(+) A-I      intronic chr1:222807552(+) A-I      intronic chr1:222811244(+) A-I      intronic chr1:222811247(+) A-I      intronic chr1:222811949(+) A-I      intronic chr1:222807332(+) A-I      intronic chr1:222811285(+) A-I      intronic chr1:222811207(+) A-I      intronic chr1:222807543(+) A-I      intronic chr1:222811813(+) A-I      intronic chr1:222811942(+) A-I      intronic chr1:222807335(+) A-I      intronic chr1:222811804(+) A-I      intronic chr1:222807542(+) A-I      intronic chr1:222811133(+) A-I      intronic chr1:222807297(+) A-I      intronic chr1:222807262(+) A-I      intronic chr1:222807613(+) A-I      intronic chr1:222811832(+) A-I      intronic chr1:222814344(+) A-I      intronic chr1:222811794(+) A-I      intronic chr1:222811151(+) A-I      intronic chr1:222811918(+) A-I      intronic chr1:222811163(+) A-I      intronic chr1:222807322(+) A-I      intronic chr1:222811262(+) A-I      intronic chr1:222819721(+) A-I      intronic chr1:222807605(+) A-I      intronic chr1:222811831(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	MIA3	chr1:222811133(+) A-G intron -    22484847 chr1:222811207(+) A-G intron -    22484847 chr1:222811244(+) A-G intron -    22484847 chr1:222811247(+) A-G intron -    22484847 chr1:222811262(+) A-G intron -    22484847 chr1:222811813(+) A-G intron -    22484847 chr1:222811831(+) A-G intron -    22484847 chr1:222811918(+) A-G intron -    22484847 chr1:222811942(+) A-G intron -    22484847 chr1:222811949(+) A-G intron -    22484847 chr1:222819689(+) G-T intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MIA3	chr1:222791525-222791526(+) m6A CDS//exon       24981863 chr1:222791559-222791560(+) m6A CDS//exon       24981863 chr1:222800978-222800979(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr1:222800996-222800997(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085 chr1:222801042-222801043(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085 chr1:222801064-222801065(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085 chr1:222801089-222801090(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr1:222801095-222801096(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr1:222801101-222801102(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr1:222801148-222801149(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:222801167-222801168(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:222801202-222801203(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr1:222801272-222801273(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr1:222801295-222801296(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22575960//22608085 chr1:222801303-222801304(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22575960//22608085 chr1:222801332-222801333(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22575960//22608085 chr1:222801356-222801357(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr1:222801382-222801383(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr1:222801390-222801391(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr1:222801435-222801436(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr1:222801443-222801444(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr1:222801523-222801524(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:222801532-222801533(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:222801582-222801583(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:222801646-222801647(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:222801715-222801716(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:222801750-222801751(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:222801833-222801834(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:222801842-222801843(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:222801904-222801905(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:222801915-222801916(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:222801944-222801945(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:222802008-222802009(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:222802105-222802106(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr1:222802339-222802340(+) m6A CDS//exon//intron       24284625//24981863//26404942//22608085 chr1:222802376-222802377(+) m6A CDS//exon//intron       24284625//24981863//26404942//27773535//22608085 chr1:222802437-222802438(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr1:222802444-222802445(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr1:222802490-222802491(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr1:222802615-222802616(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr1:222802670-222802671(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr1:222802678-222802679(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr1:222802683-222802684(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr1:222802700-222802701(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr1:222802748-222802749(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr1:222802798-222802799(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr1:222802863-222802864(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr1:222802905-222802906(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr1:222802932-222802933(+) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22608085 chr1:222802941-222802942(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr1:222802976-222802977(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr1:222803030-222803031(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr1:222803073-222803074(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr1:222803141-222803142(+) m6A CDS//exon//intron       24284625//24981863//26404942//27773535//22608085 chr1:222803151-222803152(+) m6A CDS//exon//intron       24284625//24981863//26404942//27773535//22575960//22608085 chr1:222803183-222803184(+) m6A CDS//exon//intron       24284625//24981863//26404942//27773535//22575960//22608085 chr1:222803197-222803198(+) m6A CDS//exon//intron       24284625//24981863//26404942//27773535//22575960//22608085 chr1:222803206-222803207(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:222803255-222803256(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:222803280-222803281(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:222803326-222803327(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:222803357-222803358(+) m6A CDS//exon//intron       24284625//25456834//24981863//26404942//27773535//22575960//22608085 chr1:222803435-222803436(+) m6A CDS//exon//intron       24284625//24981863//26404942//22608085 chr1:222817758-222817759(+) m6A 5'UTR//exon//intron       24284625//24209618//24981863 chr1:222817821-222817822(+) m6A CDS//exon//intron       24284625//24981863 chr1:222817866-222817867(+) m6A CDS//exon//intron       24284625 chr1:222817873-222817874(+) m6A CDS//exon//intron       24284625 chr1:222817882-222817883(+) m6A CDS//exon//intron       24284625 chr1:222823640-222823641(+) m6A CDS//exon//intron       24981863 chr1:222823665-222823666(+) m6A CDS//exon//intron       24981863 chr1:222823688-222823689(+) m6A CDS//exon//intron       24981863//27773535 chr1:222823715-222823716(+) m6A CDS//exon//intron       24981863//27773535 chr1:222823992-222823993(+) m6A CDS//exon//intron       24981863//27773535 chr1:222824005-222824006(+) m6A CDS//exon//intron       24981863//27773535 chr1:222824013-222824014(+) m6A CDS//exon//intron       24981863//27773535 chr1:222824146-222824147(+) m6A CDS//exon//intron       24981863//27773535 chr1:222826368-222826369(+) m6A CDS//intron       27773535 chr1:222827736-222827737(+) m6A CDS//intron       24981863 chr1:222828051-222828052(+) m6A CDS//intron       24981863//27773535 chr1:222828070-222828071(+) m6A CDS//intron       24981863//27773535 chr1:222832007-222832008(+) m6A exon//intron       24981863//27773535 chr1:222832032-222832033(+) m6A exon//intron       24981863//27773535 chr1:222832066-222832067(+) m6A CDS//exon//intron       24981863//27773535 chr1:222832092-222832093(+) Am CDS//exon//intron       - chr1:222832157-222832158(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr1:222832831-222832832(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr1:222832850-222832851(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr1:222832994-222832995(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr1:222833137-222833138(+) m6A CDS//exon//intron       24981863 chr1:222833289-222833290(+) m6A CDS//exon//intron       24981863 chr1:222833304-222833305(+) m6A CDS//exon//intron       24981863 chr1:222838716-222838717(+) m6A CDS//exon//intron       24284625//24209618 chr1:222838750-222838751(+) m6A CDS//exon//intron       24284625//24209618//24981863//22608085 chr1:222838765-222838766(+) m6A CDS//exon//intron       24284625//24209618//24981863//22608085 chr1:222838869-222838870(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:222838929-222838930(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22608085 chr1:222838948-222838949(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22608085 chr1:222838962-222838963(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22608085 chr1:222839077-222839078(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MIA3	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H4-3p
Interactor2: MIA3

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg