Detail Information

Basic Information:


  VIRBase ID:  

VHID00091830

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-3p:           ZBTB7C:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H4-3p ZBTB7C
miRBase
Accession/Entrez ID		 MIMAT0008402 201501
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - APM-1//APM1//ZBTB36//ZNF857C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZBTB7C
chr18:45644488(-) A-I      intronic
chr18:45635008(-) A-I      intronic
chr18:45644509(-) A-I      intronic
chr18:45622007(-) A-I      intronic
chr18:45644541(-) A-I      intronic
chr18:45594648(-) A-I      intronic
chr18:45624041(-) A-I      intronic
chr18:45617542(-) A-I      intronic
chr18:45617513(-) A-I      intronic
chr18:45628876(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZBTB7C
chr18:45553352-45553353(-) m6A 3'UTR       27773535
chr18:45553444-45553445(-) m6A 3'UTR       27773535
chr18:45553969-45553970(-) m6A 3'UTR       24284625//25456834
chr18:45554000-45554001(-) m6A 3'UTR       24284625//25456834
chr18:45554025-45554026(-) m6A 3'UTR       24284625//25456834
chr18:45554034-45554035(-) m6A 3'UTR       24284625//25456834
chr18:45554076-45554077(-) m6A 3'UTR       24284625//25456834
chr18:45555344-45555345(-) m6A 3'UTR       25456834
chr18:45555830-45555831(-) m6A CDS       25456834
chr18:45566509-45566510(-) m6A CDS       25456834//22608085
chr18:45566543-45566544(-) m6A CDS       25456834//27371828//27773536//22608085
chr18:45566651-45566652(-) m6A CDS       25456834//27371828//27773536//22608085
chr18:45566690-45566691(-) m6A CDS       25456834//27371828//27773536//22608085
chr18:45566717-45566718(-) m6A CDS       25456834//27371828//27773536//22608085
chr18:45566743-45566744(-) m6A CDS       25456834//27371828//22608085
chr18:45566777-45566778(-) m6A CDS       25456834//27371828//22608085
chr18:45566807-45566808(-) m6A CDS       25456834//27371828
chr18:45566861-45566862(-) m6A CDS       25456834//27371828
chr18:45566873-45566874(-) m6A CDS       25456834//27371828
chr18:45566904-45566905(-) m6A CDS       25456834//27371828
chr18:45566933-45566934(-) m6A CDS       25456834//24981863
chr18:45566951-45566952(-) m6A CDS       25456834//24981863
chr18:45566969-45566970(-) m6A CDS       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ZBTB7C
Exosome Blood     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H4-3p
Interactor2: ZBTB7C

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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