Detail Information

Basic Information:


  VIRBase ID:  

VHID00091794

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-3p:           GLIS3:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H4-3p GLIS3
miRBase
Accession/Entrez ID		 MIMAT0008402 169792
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - NDH//ZNF515

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GLIS3
chr9:4276092(-) A-I      intronic
chr9:4265139(-) A-I      intronic
chr9:4265971(-) A-I      intronic
chr9:4202243(-) A-I      intronic
chr9:4031094(-) A-I      intronic
chr9:4265991(-) A-I      intronic
chr9:4284810(-) A-I      intronic
chr9:4284806(-) A-I      intronic
chr9:4284693(-) A-I      intronic
chr9:4279708(-) A-I      intronic
chr9:4279729(-) A-I      intronic
chr9:4279746(-) A-I      intronic
chr9:3851940(-) A-I      intronic
chr9:3851963(-) A-I      intronic
chr9:3854739(-) A-I      intronic
chr9:3854741(-) A-I      intronic
chr9:3854742(-) A-I      intronic
chr9:4161817(-) A-I      intronic
chr9:4161803(-) A-I      intronic
chr9:3854749(-) A-I      intronic
chr9:3962098(-) A-I      intronic
chr9:3962104(-) A-I      intronic
chr9:4161776(-) A-I      intronic
chr9:4161764(-) A-I      intronic
chr9:4012917(-) A-I      intronic
chr9:4012893(-) A-I      intronic
chr9:4012892(-) A-I      intronic
chr9:4012875(-) A-I      intronic
chr9:4012870(-) A-I      intronic
chr9:4012869(-) A-I      intronic
chr9:4012862(-) A-I      intronic
chr9:4012820(-) A-I      intronic
chr9:4012802(-) A-I      intronic
chr9:4012800(-) A-I      intronic
chr9:3965466(-) A-I      intronic
chr9:4012840(-) A-I      intronic
chr9:4012845(-) A-I      intronic
chr9:4012849(-) A-I      intronic
chr9:4012884(-) A-I      intronic
chr9:4012910(-) A-I      intronic
chr9:4012911(-) A-I      intronic
chr9:4025136(-) A-I      intronic
chr9:4159633(-) A-I      intronic
chr9:4159662(-) A-I      intronic
chr9:4161755(-) A-I      intronic
chr9:4161775(-) A-I      intronic
chr9:4161812(-) A-I      intronic
chr9:4161918(-) A-I      intronic
chr9:4161923(-) A-I      intronic
chr9:4202236(-) A-I      intronic
chr9:4202262(-) A-I      intronic
chr9:4202315(-) A-I      intronic
chr9:4202326(-) A-I      intronic
chr9:4235109(-) A-I      intronic
chr9:4235125(-) A-I      intronic
chr9:4235134(-) A-I      intronic
chr9:4235199(-) A-I      intronic
chr9:4244848(-) A-I      intronic
chr9:4244849(-) A-I      intronic
chr9:4246114(-) A-I      intronic
chr9:4246120(-) A-I      intronic
chr9:4246187(-) A-I      intronic
chr9:4254780(-) A-I      intronic
chr9:4254796(-) A-I      intronic
chr9:4260239(-) A-I      intronic
chr9:4260248(-) A-I      intronic
chr9:4260373(-) A-I      intronic
chr9:4260710(-) A-I      intronic
chr9:4265072(-) A-I      intronic
chr9:4265115(-) A-I      intronic
chr9:3854817(-) A-I      intronic
chr9:4161757(-) A-I      intronic
chr9:3966539(-) A-I      intronic
chr9:3965467(-) A-I      intronic
chr9:4161880(-) A-I      intronic
chr9:4202055(-) A-I      intronic
chr9:4201999(-) A-I      intronic
chr9:3962206(-) A-I      intronic
chr9:4162615(-) A-I      intronic
chr9:3966682(-) A-I      intronic
chr9:3965332(-) A-I      intronic
chr9:4283363(-) A-I      intronic
chr9:3965224(-) A-I      intronic
chr9:3852109(-) A-I      intronic
chr9:4246132(-) A-I      intronic
chr9:4202017(-) A-I      intronic
chr9:4202027(-) A-I      intronic
chr9:4202037(-) A-I      intronic
chr9:4202154(-) A-I      intronic
chr9:4276101(-) A-I      intronic
chr9:4034167(-) A-I      intronic
chr9:4260382(-) A-I      intronic
chr9:4025130(-) A-I      intronic
chr9:3854589(-) A-I      intronic
chr9:4012955(-) A-I      intronic
chr9:3853153(-) A-I      intronic
chr9:4091353(-) A-I      intronic
chr9:4264910(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GLIS3
chr9:4201981(-) A-G intron -    22484847
chr9:4201999(-) A-G intron -    22484847
chr9:4202017(-) A-G intron -    22484847
chr9:4202027(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GLIS3
chr9:3824720-3824721(-) m6A 3'UTR       24981863//27773535
chr9:3824760-3824761(-) m6A 3'UTR       27773535
chr9:3824844-3824845(-) m6A 3'UTR       27773535
chr9:3827258-3827259(-) m6A 3'UTR//exon       24981863//27773535
chr9:3827263-3827264(-) m6A 3'UTR//exon       24981863//27773535
chr9:3827297-3827298(-) m6A 3'UTR//exon       24981863//27773535
chr9:3827303-3827304(-) m6A 3'UTR//exon       24981863
chr9:3827389-3827390(-) m6A 3'UTR//exon       24981863
chr9:3827428-3827429(-) m6A 3'UTR//exon       24981863
chr9:3827549-3827550(-) m6A 3'UTR//exon       24981863
chr9:3827765-3827766(-) m6A 3'UTR//exon       27773535
chr9:3827890-3827891(-) m6A 3'UTR//exon       24209618//24981863//27773535
chr9:3827902-3827903(-) m6A 3'UTR//exon       24209618//24981863//27773535
chr9:3827909-3827910(-) m6A 3'UTR//exon       24209618//24981863//27773535
chr9:3827966-3827967(-) m6A 3'UTR//exon       24209618//24981863//27773535
chr9:3828041-3828042(-) m6A 3'UTR//exon       24209618//24981863//27773535
chr9:3828058-3828059(-) m6A 3'UTR//exon       24209618//24981863//26404942//27773535
chr9:3828125-3828126(-) m6A 3'UTR//exon       24209618//24981863//28052920//26404942//27773535
chr9:3828196-3828197(-) m6A 3'UTR//exon       24209618//24981863//28052920//26404942//27773535
chr9:3828239-3828240(-) m6A 3'UTR//exon       24209618//24981863//26404942//27773535
chr9:3828314-3828315(-) m6A CDS//exon       24209618//24981863//27773535
chr9:3829389-3829390(-) m6A CDS//exon       27773535
chr9:3855451-3855452(-) m6A exon//intron       27773535
chr9:3855531-3855532(-) m6A exon//intron       27773535
chr9:3856047-3856048(-) m6A CDS//exon       24981863//27773535
chr9:3856107-3856108(-) m6A CDS//exon       24981863//27773535
chr9:3879503-3879504(-) m6A CDS//exon       27773535
chr9:3879556-3879557(-) m6A CDS//exon       27773535
chr9:3932423-3932424(-) m6A CDS//exon       27773535
chr9:3932467-3932468(-) m6A CDS//exon       27773535
chr9:3932801-3932802(-) m6A exon//intron       27773535
chr9:3932860-3932861(-) m6A exon//intron       27773535
chr9:3932884-3932885(-) m6A exon//intron       27773535
chr9:4117818-4117819(-) m6A CDS//exon       24981863//26404942
chr9:4117879-4117880(-) m6A CDS//exon       24209618//24981863//26404942
chr9:4118152-4118153(-) m6A CDS       24209618//24981863
chr9:4118189-4118190(-) m6A CDS       24209618
chr9:4118705-4118706(-) m6A CDS//exon       24981863//27773535
chr9:4125843-4125844(-) m6A CDS//intron       27773535
chr9:4285641-4285642(-) m6A exon//intron       27773535
chr9:4285651-4285652(-) m6A exon//intron       27773535
chr9:4285659-4285660(-) m6A exon//intron       27773535
chr9:4286161-4286162(-) m6A CDS//exon//intron       24981863
chr9:4286210-4286211(-) m6A CDS//exon//intron       24209618//24981863
chr9:4286316-4286317(-) m6A CDS//exon//intron       24209618//24981863//27773535//27773536//22608085
chr9:4286379-4286380(-) m6A CDS//exon//intron       24209618//24981863//27773535//22608085
chr9:4286388-4286389(-) m6A CDS//exon//intron       24209618//24981863//27773535//22608085
chr9:4286490-4286491(-) m6A 5'UTR//exon//intron       24209618//24981863//26404942//27773535//22608085
chr9:4298454-4298455(-) m6A 5'UTR//intron       24209618
chr9:4299748-4299749(-) m6A 5'UTR//exon//intron       24209618//24981863//26404942
chr9:4299759-4299760(-) m6A 5'UTR//exon//intron       24209618//24981863//26404942
chr9:4299786-4299787(-) m6A 5'UTR//exon//intron       24209618//24981863//26404942
chr9:4299791-4299792(-) m6A 5'UTR//exon//intron       24209618//24981863//26404942
chr9:4299864-4299865(-) m6A 5'UTR//exon//intron       24209618//24981863
chr9:4299911-4299912(-) m6A 5'UTR//exon//intron       24209618
chr9:4308812-4308813(-) m6A exon       24209618
chr9:4308818-4308819(-) m6A exon       24209618

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate GLIS3
Chromatin K562 cells     -
Exosome Blood     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H4-3p
Interactor2: GLIS3

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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