Detail Information

Basic Information:


  VIRBase ID:  

VHID00091560

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-3p:           LRRC58:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H4-3p LRRC58
miRBase
Accession/Entrez ID		 MIMAT0008402 116064
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LRRC58
chr3:120064948(-) A-I      intronic
chr3:120059706(-) A-I      intronic
chr3:120045198(-) A-I      3'UTR
chr3:120045220(-) A-I      3'UTR
chr3:120045195(-) A-I      3'UTR
chr3:120045189(-) A-I      3'UTR
chr3:120046655(-) A-I      3'UTR
chr3:120045176(-) A-I      3'UTR
chr3:120058903(-) A-I      intronic
chr3:120059657(-) A-I      intronic
chr3:120059620(-) A-I      intronic
chr3:120059554(-) A-I      intronic
chr3:120056827(-) A-I      intronic
chr3:120051753(-) A-I      intronic
chr3:120066377(-) A-I      intronic
chr3:120059658(-) A-I      intronic
chr3:120059730(-) A-I      intronic
chr3:120064874(-) A-I      intronic
chr3:120065057(-) A-I      intronic
chr3:120066371(-) A-I      intronic
chr3:120051751(-) A-I      intronic
chr3:120045078(-) A-I      3'UTR
chr3:120045092(-) A-I      3'UTR
chr3:120045108(-) A-I      3'UTR
chr3:120046821(-) A-I      3'UTR
chr3:120045288(-) A-I      3'UTR
chr3:120045311(-) A-I      3'UTR
chr3:120046817(-) A-I      3'UTR
chr3:120045258(-) A-I      3'UTR
chr3:120064843(-) A-I      intronic
chr3:120064992(-) A-I      intronic
chr3:120064882(-) A-I      intronic
chr3:120051707(-) A-I      intronic
chr3:120064870(-) A-I      intronic
chr3:120064996(-) A-I      intronic
chr3:120064982(-) A-I      intronic
chr3:120064995(-) A-I      intronic
chr3:120052003(-) A-I      intronic
chr3:120064933(-) A-I      intronic
chr3:120064961(-) A-I      intronic
chr3:120066440(-) A-I      intronic
chr3:120064942(-) A-I      intronic
chr3:120064932(-) A-I      intronic
chr3:120051659(-) A-I      intronic
chr3:120064931(-) A-I      intronic
chr3:120064939(-) A-I      intronic
chr3:120065090(-) A-I      intronic
chr3:120064897(-) A-I      intronic
chr3:120064956(-) A-I      intronic
chr3:120064966(-) A-I      intronic
chr3:120065102(-) A-I      intronic
chr3:120046666(-) A-I      3'UTR
chr3:120046869(-) A-I      3'UTR
chr3:120046787(-) A-I      3'UTR
chr3:120046703(-) A-I      3'UTR
chr3:120059661(-) A-I      intronic
chr3:120064895(-) A-I      intronic
chr3:120051721(-) A-I      intronic
chr3:120059622(-) A-I      intronic
chr3:120059662(-) A-I      intronic
chr3:120059528(-) A-I      intronic
chr3:120066416(-) A-I      intronic
chr3:120058987(-) A-I      intronic
chr3:120051779(-) A-I      intronic
chr3:120066488(-) A-I      intronic
chr3:120058845(-) A-I      intronic
chr3:120066519(-) A-I      intronic
chr3:120065047(-) A-I      intronic
chr3:120059533(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LRRC58
chr3:120066416(-) A-I intron -    15258596
chr3:120066440(-) A-I intron -    15258596
chr3:120066488(-) A-I intron -    15258596
chr3:120066519(-) A-I intron -    15258596
chr3:120046209(-) A-G exon 3'UTR    21725310
chr3:120046378(-) T-C exon 3'UTR    21725310
chr3:120045227(-) C-A exon 3'UTR    22484847
chr3:120046601(-) C-A exon 3'UTR    22484847
chr3:120046873(-) A-G exon 3'UTR    22484847
chr3:120051707(-) A-G intron -    22484847
chr3:120051721(-) A-G intron -    22484847
chr3:120051805(-) A-G intron -    22484847
chr3:120052002(-) A-G intron -    22484847
chr3:120052003(-) A-G intron -    22484847
chr3:120058845(-) A-G intron -    22484847
chr3:120058846(-) A-G intron -    22484847
chr3:120059528(-) A-G intron -    22484847
chr3:120059533(-) A-G intron -    22484847
chr3:120064897(-) A-G intron -    22484847
chr3:120064942(-) A-G intron -    22484847
chr3:120065047(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LRRC58
chr3:120043462-120043463(-) m6A 3'UTR       27773535
chr3:120043485-120043486(-) m6A 3'UTR       27773535
chr3:120048875-120048876(-) m6A 3'UTR       27773535
chr3:120048887-120048888(-) m6A 3'UTR       27773535
chr3:120048947-120048948(-) m6A 3'UTR       24981863//27773535
chr3:120048965-120048966(-) m6A 3'UTR       24981863//27773535
chr3:120048993-120048994(-) m6A 3'UTR       24981863//27773535
chr3:120049111-120049112(-) m6A 3'UTR       27773535
chr3:120049494-120049495(-) m6A 3'UTR       22608085
chr3:120049528-120049529(-) m6A 3'UTR       22608085
chr3:120049577-120049578(-) m6A 3'UTR       22608085
chr3:120049643-120049644(-) m6A 3'UTR       24981863//22608085
chr3:120049708-120049709(-) Gm 3'UTR       -
chr3:120049713-120049714(-) m6A 3'UTR       24981863//22608085
chr3:120049913-120049914(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr3:120049993-120049994(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr3:120050011-120050012(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr3:120050045-120050046(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr3:120050212-120050213(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr3:120050229-120050230(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr3:120053722-120053723(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr3:120053810-120053811(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr3:120067651-120067652(-) m6A CDS       27773536
chr3:120067791-120067792(-) m6A CDS       27773536
chr3:120068040-120068041(-) m6A CDS       24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr3:120068045-120068046(-) m6A CDS       24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr3:120068142-120068143(-) m6A 5'UTR       24209618//25456834//24981863//27371828//27773536//22575960//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate LRRC58
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H4-3p
Interactor2: LRRC58

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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