Basic Information:

  VIRBase ID:  

VHID00091079

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-3p:  MIMAT0008402          PCDH10:  NM_020815     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H4-3p	PCDH10
miRBase Accession/Entrez ID	MIMAT0008402	57575
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	OL-PCDH//PCDH19

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PCDH10	chr4:134104370(+) A-I      intronic chr4:134104368(+) A-I      intronic chr4:134104403(+) A-I      intronic chr4:134104397(+) A-I      intronic chr4:134104422(+) A-I      intronic chr4:134104391(+) A-I      intronic chr4:134112566(+) A-I      3'UTR chr4:134092054(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PCDH10	chr4:134070502-134070503(+) m6A 5'UTR       25456834//24981863//22608085 chr4:134070519-134070520(+) m6A 5'UTR       25456834//24981863//22608085 chr4:134070551-134070552(+) m6A 5'UTR       25456834//24981863//22608085 chr4:134070565-134070566(+) m6A 5'UTR       25456834//24981863//22608085 chr4:134070611-134070612(+) m6A 5'UTR       25456834//24981863//22608085 chr4:134070620-134070621(+) m6A 5'UTR       25456834//24981863//22608085 chr4:134070626-134070627(+) m6A 5'UTR       25456834//24981863//22608085 chr4:134070636-134070637(+) m6A 5'UTR       25456834//24981863//22608085 chr4:134070682-134070683(+) m6A 5'UTR       25456834//24981863//22608085 chr4:134070777-134070778(+) Y 5'UTR       26075521 chr4:134070922-134070923(+) m6A 5'UTR       25456834//24981863//22608085 chr4:134070933-134070934(+) m6A 5'UTR       25456834//24981863//22608085 chr4:134070982-134070983(+) m6A 5'UTR       24981863//22608085 chr4:134071161-134071162(+) m6A 5'UTR       24981863//22608085 chr4:134071381-134071382(+) m6A CDS       25456834//24981863//22608085 chr4:134071425-134071426(+) m6A CDS       25456834//24981863//22608085 chr4:134071435-134071436(+) m6A CDS       25456834//24981863//22608085 chr4:134071475-134071476(+) m6A CDS       25456834//24981863//22608085 chr4:134071488-134071489(+) m6A CDS       25456834//24981863//22608085 chr4:134071502-134071503(+) m6A CDS       25456834//24981863//22608085 chr4:134071533-134071534(+) m6A CDS       25456834//24981863//22608085 chr4:134071540-134071541(+) m6A CDS       25456834//24981863//22608085 chr4:134071552-134071553(+) m6A CDS       25456834//24981863//22608085 chr4:134071596-134071597(+) m6A CDS       25456834//24981863//22608085 chr4:134071635-134071636(+) m6A CDS       25456834//24981863//22608085 chr4:134071671-134071672(+) m6A CDS       25456834//24981863//22608085 chr4:134071811-134071812(+) m6A CDS       25456834//24981863//22608085 chr4:134071863-134071864(+) m6A CDS       25456834//24981863//22608085 chr4:134072019-134072020(+) m6A CDS       25456834//24981863//22608085 chr4:134072079-134072080(+) m6A CDS       25456834//24981863//22608085 chr4:134072200-134072201(+) m6A CDS       25456834//24981863//22608085 chr4:134072221-134072222(+) m6A CDS       25456834//24981863//22608085 chr4:134072244-134072245(+) m6A CDS       25456834//24981863//22608085 chr4:134072289-134072290(+) m6A CDS       25456834//24981863//22608085 chr4:134072559-134072560(+) m6A CDS       25456834//24981863//22608085 chr4:134072574-134072575(+) m6A CDS       25456834//24981863//22608085 chr4:134072604-134072605(+) m6A CDS       25456834//24981863//22608085 chr4:134072718-134072719(+) m6A CDS       25456834//24981863//22608085 chr4:134072907-134072908(+) m6A CDS       25456834//24981863//22608085 chr4:134073044-134073045(+) m6A CDS       25456834//24981863//22608085 chr4:134073174-134073175(+) m6A CDS       25456834//24981863//22608085 chr4:134073189-134073190(+) m6A CDS       25456834//24981863//22608085 chr4:134073637-134073638(+) m6A CDS       22608085 chr4:134073651-134073652(+) m6A CDS       24981863//22608085 chr4:134073788-134073789(+) m6A CDS       24981863//22608085 chr4:134073834-134073835(+) m6A CDS       24981863//22608085 chr4:134073945-134073946(+) m6A CDS//intron       - chr4:134075466-134075467(+) m6A CDS       24981863//22608085 chr4:134075502-134075503(+) m6A CDS       24981863//22608085 chr4:134084182-134084183(+) Cm CDS//exon       - chr4:134084269-134084270(+) m6A CDS//exon       25456834 chr4:134084281-134084282(+) m6A CDS//exon       25456834 chr4:134084298-134084299(+) m6A CDS//exon       25456834 chr4:134084393-134084394(+) m6A CDS//exon       25456834//24981863 chr4:134084423-134084424(+) m6A CDS//exon       24981863//22608085 chr4:134111328-134111329(+) m6A 3'UTR//intron       24981863//22608085 chr4:134111467-134111468(+) m6A 3'UTR//intron       24981863//22575960//22608085 chr4:134111514-134111515(+) m6A 3'UTR//intron       24981863//22575960//22608085 chr4:134111523-134111524(+) m6A 3'UTR//intron       24981863//22575960//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PCDH10	Cytosol HeLa-S3 cells     - Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H4-3p
Interactor2: PCDH10

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg