Basic Information:

  VIRBase ID:  

VHID00090883

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-3p:  MIMAT0008402          RAVER2:  NM_018211     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H4-3p	RAVER2
miRBase Accession/Entrez ID	MIMAT0008402	55225
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RAVER2	chr1:65265195(+) A-I      intronic chr1:65290404(+) A-I      intronic chr1:65277938(+) A-I      intronic chr1:65258836(+) A-I      intronic chr1:65225365(+) A-I      intronic chr1:65225366(+) A-I      intronic chr1:65225381(+) A-I      intronic chr1:65225384(+) A-I      intronic chr1:65218901(+) A-I      intronic chr1:65274244(+) A-I      intronic chr1:65274245(+) A-I      intronic chr1:65254088(+) A-I      intronic chr1:65267365(+) A-I      intronic chr1:65254105(+) A-I      intronic chr1:65267470(+) A-I      intronic chr1:65290534(+) A-I      intronic chr1:65267375(+) A-I      intronic chr1:65254621(+) A-I      intronic chr1:65218790(+) A-I      intronic chr1:65290355(+) A-I      intronic chr1:65258787(+) A-I      intronic chr1:65267349(+) A-I      intronic chr1:65252333(+) A-I      intronic chr1:65272013(+) A-I      intronic chr1:65253901(+) A-I      intronic chr1:65267456(+) A-I      intronic chr1:65266979(+) A-I      intronic chr1:65254590(+) A-I      intronic chr1:65254644(+) A-I      intronic chr1:65267397(+) A-I      intronic chr1:65267297(+) A-I      intronic chr1:65254601(+) A-I      intronic chr1:65290467(+) A-I      intronic chr1:65266802(+) A-I      intronic chr1:65274328(+) A-I      intronic chr1:65254100(+) A-I      intronic chr1:65267298(+) A-I      intronic chr1:65289758(+) A-I      intronic chr1:65267056(+) A-I      intronic chr1:65277881(+) A-I      intronic chr1:65258775(+) A-I      intronic chr1:65267471(+) A-I      intronic chr1:65252297(+) A-I      intronic chr1:65290507(+) A-I      intronic chr1:65265398(+) A-I      intronic chr1:65254666(+) A-I      intronic chr1:65267475(+) A-I      intronic chr1:65249916(+) A-I      intronic chr1:65277995(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RAVER2	chr1:65243383-65243384(+) m6A CDS       24284625//24209618//22608085 chr1:65243468-65243469(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr1:65243569-65243570(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:65243588-65243589(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:65243606-65243607(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:65243699-65243700(+) m6A CDS       24284625//24209618//24981863//22608085 chr1:65296638-65296639(+) m6A CDS       24284625 chr1:65296745-65296746(+) m6A 3'UTR       24284625//24981863//22608085 chr1:65296790-65296791(+) m6A 3'UTR       24284625//24981863//22608085 chr1:65296843-65296844(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr1:65296856-65296857(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr1:65296918-65296919(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr1:65296950-65296951(+) m6A 3'UTR       24981863//22608085 chr1:65297005-65297006(+) m6A 3'UTR       22608085 chr1:65298566-65298567(+) m6A 3'UTR       25456834//24981863//27773535//22608085 chr1:65298574-65298575(+) m6A 3'UTR       25456834//24981863//27773535//22608085 chr1:65298657-65298658(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr1:65298663-65298664(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr1:65298671-65298672(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr1:65298685-65298686(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr1:65298700-65298701(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr1:65298800-65298801(+) m6A 3'UTR       24284625//24209618//22608085 chr1:65298829-65298830(+) m6A 3'UTR       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RAVER2	Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H4-3p
Interactor2: RAVER2

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg