Detail Information

Basic Information:


  VIRBase ID:  

VHID00090808

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-3p:           SLC35F2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H4-3p SLC35F2
miRBase
Accession/Entrez ID		 MIMAT0008402 54733
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - HSNOV1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC35F2
chr11:107744240(-) A-I      intronic
chr11:107744243(-) A-I      intronic
chr11:107744275(-) A-I      intronic
chr11:107744211(-) A-I      intronic
chr11:107672864(-) A-I      intronic
chr11:107671864(-) A-I      intronic
chr11:107744207(-) A-I      intronic
chr11:107744208(-) A-I      intronic
chr11:107744209(-) A-I      intronic
chr11:107744210(-) A-I      intronic
chr11:107669680(-) A-I      intronic
chr11:107666773(-) A-I      intronic
chr11:107668883(-) A-I      intronic
chr11:107668975(-) A-I      intronic
chr11:107669636(-) A-I      intronic
chr11:107669645(-) A-I      intronic
chr11:107669678(-) A-I      intronic
chr11:107669716(-) A-I      intronic
chr11:107669780(-) A-I      intronic
chr11:107670382(-) A-I      intronic
chr11:107670384(-) A-I      intronic
chr11:107670393(-) A-I      intronic
chr11:107671722(-) A-I      intronic
chr11:107671795(-) A-I      intronic
chr11:107672773(-) A-I      intronic
chr11:107672782(-) A-I      intronic
chr11:107672877(-) A-I      intronic
chr11:107677926(-) A-I      intronic
chr11:107678076(-) A-I      intronic
chr11:107678131(-) A-I      intronic
chr11:107678169(-) A-I      intronic
chr11:107678421(-) A-I      intronic
chr11:107682859(-) A-I      intronic
chr11:107683133(-) A-I      intronic
chr11:107684544(-) A-I      intronic
chr11:107684570(-) A-I      intronic
chr11:107684571(-) A-I      intronic
chr11:107684584(-) A-I      intronic
chr11:107712710(-) A-I      intronic
chr11:107684604(-) A-I      intronic
chr11:107685444(-) A-I      intronic
chr11:107685517(-) A-I      intronic
chr11:107686025(-) A-I      intronic
chr11:107686031(-) A-I      intronic
chr11:107686046(-) A-I      intronic
chr11:107686058(-) A-I      intronic
chr11:107687097(-) A-I      intronic
chr11:107687756(-) A-I      intronic
chr11:107687759(-) A-I      intronic
chr11:107687786(-) A-I      intronic
chr11:107687878(-) A-I      intronic
chr11:107670463(-) A-I      intronic
chr11:107710638(-) A-I      intronic
chr11:107687939(-) A-I      intronic
chr11:107688543(-) A-I      intronic
chr11:107688745(-) A-I      intronic
chr11:107688761(-) A-I      intronic
chr11:107690789(-) A-I      intronic
chr11:107677989(-) A-I      intronic
chr11:107690898(-) A-I      intronic
chr11:107683163(-) A-I      intronic
chr11:107696236(-) A-I      intronic
chr11:107696362(-) A-I      intronic
chr11:107697158(-) A-I      intronic
chr11:107698623(-) A-I      intronic
chr11:107698626(-) A-I      intronic
chr11:107698631(-) A-I      intronic
chr11:107702175(-) A-I      intronic
chr11:107704096(-) A-I      intronic
chr11:107704121(-) A-I      intronic
chr11:107705289(-) A-I      intronic
chr11:107705293(-) A-I      intronic
chr11:107709224(-) A-I      intronic
chr11:107709466(-) A-I      intronic
chr11:107709548(-) A-I      intronic
chr11:107709587(-) A-I      intronic
chr11:107709995(-) A-I      intronic
chr11:107710007(-) A-I      intronic
chr11:107710024(-) A-I      intronic
chr11:107710087(-) A-I      intronic
chr11:107710092(-) A-I      intronic
chr11:107710472(-) A-I      intronic
chr11:107710490(-) A-I      intronic
chr11:107710504(-) A-I      intronic
chr11:107710518(-) A-I      intronic
chr11:107710558(-) A-I      intronic
chr11:107710583(-) A-I      intronic
chr11:107710611(-) A-I      intronic
chr11:107710630(-) A-I      intronic
chr11:107712072(-) A-I      intronic
chr11:107726667(-) A-I      intronic
chr11:107712157(-) A-I      intronic
chr11:107717976(-) A-I      intronic
chr11:107669719(-) A-I      intronic
chr11:107712167(-) A-I      intronic
chr11:107712203(-) A-I      intronic
chr11:107712207(-) A-I      intronic
chr11:107712729(-) A-I      intronic
chr11:107712730(-) A-I      intronic
chr11:107712735(-) A-I      intronic
chr11:107713188(-) A-I      intronic
chr11:107713229(-) A-I      intronic
chr11:107713378(-) A-I      intronic
chr11:107713406(-) A-I      intronic
chr11:107716225(-) A-I      intronic
chr11:107721330(-) A-I      intronic
chr11:107721331(-) A-I      intronic
chr11:107721538(-) A-I      intronic
chr11:107727203(-) A-I      intronic
chr11:107781661(-) A-I      intronic
chr11:107712206(-) A-I      intronic
chr11:107663870(-) A-I      intronic
chr11:107686110(-) A-I      intronic
chr11:107687968(-) A-I      intronic
chr11:107718004(-) A-I      intronic
chr11:107694411(-) A-I      intronic
chr11:107671751(-) A-I      intronic
chr11:107682887(-) A-I      intronic
chr11:107687988(-) A-I      intronic
chr11:107669003(-) A-I      intronic
chr11:107741191(-) A-I      intronic
chr11:107667625(-) A-I      intronic
chr11:107684483(-) A-I      intronic
chr11:107712705(-) A-I      intronic
chr11:107684529(-) A-I      intronic
chr11:107694593(-) A-I      intronic
chr11:107710540(-) A-I      intronic
chr11:107697091(-) A-I      intronic
chr11:107710065(-) A-I      intronic
chr11:107671418(-) A-I      intronic
chr11:107694591(-) A-I      intronic
chr11:107709543(-) A-I      intronic
chr11:107696246(-) A-I      intronic
chr11:107690799(-) A-I      intronic
chr11:107680276(-) A-I      intronic
chr11:107717883(-) A-I      intronic
chr11:107662688(-) A-I      3'UTR
chr11:107662480(-) A-I      3'UTR
chr11:107662593(-) A-I      3'UTR
chr11:107710062(-) A-I      intronic
chr11:107670522(-) A-I      intronic
chr11:107670753(-) A-I      intronic
chr11:107687919(-) A-I      intronic
chr11:107678094(-) A-I      intronic
chr11:107680282(-) A-I      intronic
chr11:107745328(-) A-I      intronic
chr11:107713337(-) A-I      intronic
chr11:107713218(-) A-I      intronic
chr11:107670419(-) A-I      intronic
chr11:107702224(-) A-I      intronic
chr11:107688528(-) A-I      intronic
chr11:107684088(-) A-I      intronic
chr11:107671914(-) A-I      intronic
chr11:107713384(-) A-I      intronic
chr11:107713402(-) A-I      intronic
chr11:107671699(-) A-I      intronic
chr11:107687091(-) A-I      intronic
chr11:107667680(-) A-I      intronic
chr11:107667492(-) A-I      intronic
chr11:107704083(-) A-I      intronic
chr11:107684610(-) A-I      intronic
chr11:107699108(-) A-I      intronic
chr11:107700736(-) A-I      intronic
chr11:107690905(-) A-I      intronic
chr11:107678568(-) A-I      intronic
chr11:107678596(-) A-I      intronic
chr11:107671508(-) A-I      intronic
chr11:107678437(-) A-I      intronic
chr11:107665055(-) A-I      intronic
chr11:107684049(-) A-I      intronic
chr11:107666697(-) A-I      intronic
chr11:107712748(-) A-I      intronic
chr11:107683162(-) A-I      intronic
chr11:107684651(-) A-I      intronic
chr11:107710491(-) A-I      intronic
chr11:107667563(-) A-I      intronic
chr11:107667671(-) A-I      intronic
chr11:107700061(-) A-I      intronic
chr11:107690860(-) A-I      intronic
chr11:107668851(-) A-I      intronic
chr11:107668211(-) A-I      intronic
chr11:107671406(-) A-I      intronic
chr11:107663811(-) A-I      intronic
chr11:107686227(-) A-I      intronic
chr11:107668222(-) A-I      intronic
chr11:107677910(-) A-I      intronic
chr11:107720289(-) A-I      intronic
chr11:107687747(-) A-I      intronic
chr11:107666772(-) A-I      intronic
chr11:107696200(-) A-I      intronic
chr11:107678144(-) A-I      intronic
chr11:107669557(-) A-I      intronic
chr11:107696213(-) A-I      intronic
chr11:107663875(-) A-I      intronic
chr11:107716567(-) A-I      intronic
chr11:107684573(-) A-I      intronic
chr11:107710658(-) A-I      intronic
chr11:107668179(-) A-I      intronic
chr11:107686208(-) A-I      intronic
chr11:107684568(-) A-I      intronic
chr11:107796254(-) A-I      intronic
chr11:107668196(-) A-I      intronic
chr11:107702085(-) A-I      intronic
chr11:107678397(-) A-I      intronic
chr11:107710452(-) A-I      intronic
chr11:107671859(-) A-I      intronic
chr11:107710586(-) A-I      intronic
chr11:107712199(-) A-I      intronic
chr11:107687256(-) A-I      intronic
chr11:107717909(-) A-I      intronic
chr11:107710544(-) A-I      intronic
chr11:107712202(-) A-I      intronic
chr11:107668167(-) A-I      intronic
chr11:107713217(-) A-I      intronic
chr11:107788892(-) A-I      intronic
chr11:107664985(-) A-I      intronic
chr11:107668838(-) A-I      intronic
chr11:107685704(-) A-I      intronic
chr11:107669796(-) A-I      intronic
chr11:107685468(-) A-I      intronic
chr11:107712740(-) A-I      intronic
chr11:107712745(-) A-I      intronic
chr11:107688601(-) A-I      intronic
chr11:107733008(-) A-I      intronic
chr11:107678123(-) A-I      intronic
chr11:107741206(-) A-I      intronic
chr11:107712807(-) A-I      intronic
chr11:107694543(-) A-I      intronic
chr11:107684555(-) A-I      intronic
chr11:107694592(-) A-I      intronic
chr11:107682774(-) A-I      intronic
chr11:107789478(-) A-I      intronic
chr11:107669750(-) A-I      intronic
chr11:107665091(-) A-I      intronic
chr11:107686161(-) A-I      intronic
chr11:107687122(-) A-I      intronic
chr11:107686201(-) A-I      intronic
chr11:107709147(-) A-I      intronic
chr11:107687819(-) A-I      intronic
chr11:107671484(-) A-I      intronic
chr11:107685471(-) A-I      intronic
chr11:107688739(-) A-I      intronic
chr11:107696235(-) A-I      intronic
chr11:107702226(-) A-I      intronic
chr11:107703358(-) A-I      intronic
chr11:107713142(-) A-I      intronic
chr11:107717977(-) A-I      intronic
chr11:107662492(-) A-I      3'UTR
chr11:107662574(-) A-I      3'UTR
chr11:107662667(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SLC35F2
chr11:107662492(-) A-G exon 3'UTR    22484847
chr11:107670522(-) A-G intron -    22484847
chr11:107676454(-) T-C intron -    22484847
chr11:107694543(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLC35F2
chr11:107662963-107662964(-) m6A 3'UTR       24209618//27371828
chr11:107663026-107663027(-) m6A 3'UTR       24284625//24209618//24981863//27371828
chr11:107663044-107663045(-) m6A 3'UTR       24284625//24209618//24981863
chr11:107663085-107663086(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr11:107663121-107663122(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr11:107663153-107663154(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//22608085
chr11:107663191-107663192(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//22608085
chr11:107663198-107663199(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//22608085
chr11:107663246-107663247(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27371828//22575960//22608085
chr11:107663257-107663258(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27371828//22575960//22608085
chr11:107663276-107663277(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27371828//22575960//22608085
chr11:107663360-107663361(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr11:107663371-107663372(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773536//22575960//22608085
chr11:107729256-107729257(-) m6A 5'UTR//intron       -
chr11:107729394-107729395(-) m6A CDS       24981863//27371828//27773536
chr11:107729482-107729483(-) m6A CDS       24981863//27371828//27773536
chr11:107729540-107729541(-) m6A 5'UTR       24981863//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SLC35F2
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H4-3p
Interactor2: SLC35F2

Evidence Support:


Prediction-Evidence miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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