Basic Information:

  VIRBase ID:  

VHID00090745

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-3p:  MIMAT0008402          HPCAL4:  NM_001282396     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H4-3p	HPCAL4
miRBase Accession/Entrez ID	MIMAT0008402	51440
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HLP4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	HPCAL4	chr1:40152021(-) A-I      intronic chr1:40147856(-) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	HPCAL4	chr1:40147856(-) A-I exon 3'UTR    19478186

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	HPCAL4	chr1:40147969-40147970(-) m6A 3'UTR       27773536 chr1:40148019-40148020(-) m6A 3'UTR       25456834//27773536//22608085 chr1:40148041-40148042(-) m6A 3'UTR       25456834//24981863//27773536//22608085 chr1:40148117-40148118(-) m6A 3'UTR       25456834//24981863//27773536//22608085 chr1:40150165-40150166(-) m6A CDS       27773536 chr1:40150219-40150220(-) m6A CDS       27773536 chr1:40150231-40150232(-) m6A CDS       27773536 chr1:40150265-40150266(-) m6A CDS       27773536 chr1:40157072-40157073(-) m6A 5'UTR       24981863//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	HPCAL4	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H4-3p
Interactor2: HPCAL4

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg