Detail Information

Basic Information:


  VIRBase ID:  

VHID00090566

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-3p:           AHCTF1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H4-3p AHCTF1
miRBase
Accession/Entrez ID		 MIMAT0008402 25909
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - ELYS//MST108//MSTP108//TMBS62

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR AHCTF1
chr1:247055811(-) A-I      intronic
chr1:247085864(-) A-I      intronic
chr1:247085869(-) A-I      intronic
chr1:247055792(-) A-I      intronic
chr1:247042938(-) A-I      intronic
chr1:247085815(-) A-I      intronic
chr1:247085897(-) A-I      intronic
chr1:247042881(-) A-I      intronic
chr1:247033642(-) A-I      intronic
chr1:247055801(-) A-I      intronic
chr1:247042927(-) A-I      intronic
chr1:247055802(-) A-I      intronic
chr1:247055816(-) A-I      intronic
chr1:247055826(-) A-I      intronic
chr1:247055827(-) A-I      intronic
chr1:247093174(-) A-I      intronic
chr1:247010504(-) A-I      intronic
chr1:247024081(-) A-I      intronic
chr1:247043002(-) A-I      intronic
chr1:247043049(-) A-I      intronic
chr1:247093910(-) A-I      intronic
chr1:247093310(-) A-I      intronic
chr1:247093308(-) A-I      intronic
chr1:247093242(-) A-I      intronic
chr1:247085654(-) A-I      intronic
chr1:247092684(-) A-I      intronic
chr1:247092680(-) A-I      intronic
chr1:247092672(-) A-I      intronic
chr1:247092628(-) A-I      intronic
chr1:247086117(-) A-I      intronic
chr1:247086040(-) A-I      intronic
chr1:247085873(-) A-I      intronic
chr1:247085837(-) A-I      intronic
chr1:247085775(-) A-I      intronic
chr1:247044894(-) A-I      intronic
chr1:247085496(-) A-I      intronic
chr1:247081932(-) A-I      intronic
chr1:247081926(-) A-I      intronic
chr1:247075782(-) A-I      intronic
chr1:247075728(-) A-I      intronic
chr1:247075699(-) A-I      intronic
chr1:247044960(-) A-I      intronic
chr1:247044968(-) A-I      intronic
chr1:247044977(-) A-I      intronic
chr1:247031751(-) A-I      intronic
chr1:247044983(-) A-I      intronic
chr1:247045118(-) A-I      intronic
chr1:247045392(-) A-I      intronic
chr1:247005190(-) A-I      intronic
chr1:247093099(-) A-I      intronic
chr1:247045405(-) A-I      intronic
chr1:247045411(-) A-I      intronic
chr1:247045428(-) A-I      intronic
chr1:247045476(-) A-I      intronic
chr1:247056038(-) A-I      intronic
chr1:247056072(-) A-I      intronic
chr1:247056074(-) A-I      intronic
chr1:247056080(-) A-I      intronic
chr1:247057321(-) A-I      intronic
chr1:247075655(-) A-I      intronic
chr1:247075663(-) A-I      intronic
chr1:247075673(-) A-I      intronic
chr1:247005087(-) A-I      intronic
chr1:247005162(-) A-I      intronic
chr1:247007950(-) A-I      intronic
chr1:247031835(-) A-I      intronic
chr1:247005186(-) A-I      intronic
chr1:247033528(-) A-I      intronic
chr1:247005196(-) A-I      intronic
chr1:247005317(-) A-I      intronic
chr1:247005680(-) A-I      intronic
chr1:247005744(-) A-I      intronic
chr1:247005749(-) A-I      intronic
chr1:247007770(-) A-I      intronic
chr1:247007904(-) A-I      intronic
chr1:247033681(-) A-I      intronic
chr1:247042967(-) A-I      intronic
chr1:247042982(-) A-I      intronic
chr1:247042995(-) A-I      intronic
chr1:247007926(-) A-I      intronic
chr1:247010893(-) A-I      intronic
chr1:247010829(-) A-I      intronic
chr1:247010534(-) A-I      intronic
chr1:247010507(-) A-I      intronic
chr1:247011007(-) A-I      intronic
chr1:247011644(-) A-I      intronic
chr1:247010982(-) A-I      intronic
chr1:247010913(-) A-I      intronic
chr1:247021373(-) A-I      intronic
chr1:247023399(-) A-I      intronic
chr1:247024080(-) A-I      intronic
chr1:247075307(-) A-I      intronic
chr1:247005103(-) A-I      intronic
chr1:247005131(-) A-I      intronic
chr1:247057262(-) A-I      intronic
chr1:247085825(-) A-I      intronic
chr1:247042947(-) A-I      intronic
chr1:247012057(-) A-I      intronic
chr1:247005093(-) A-I      intronic
chr1:247085791(-) A-I      intronic
chr1:247086095(-) A-I      intronic
chr1:247085790(-) A-I      intronic
chr1:247085866(-) A-I      intronic
chr1:247031559(-) A-I      intronic
chr1:247033483(-) A-I      intronic
chr1:247085867(-) A-I      intronic
chr1:247057618(-) A-I      intronic
chr1:247074932(-) A-I      intronic
chr1:247011737(-) A-I      intronic
chr1:247055708(-) A-I      intronic
chr1:247005099(-) A-I      intronic
chr1:247005808(-) A-I      intronic
chr1:247045058(-) A-I      intronic
chr1:247005091(-) A-I      intronic
chr1:247057382(-) A-I      intronic
chr1:247055652(-) A-I      intronic
chr1:247093591(-) A-I      intronic
chr1:247056098(-) A-I      intronic
chr1:247005367(-) A-I      intronic
chr1:247005098(-) A-I      intronic
chr1:247005692(-) A-I      intronic
chr1:247057429(-) A-I      intronic
chr1:247093965(-) A-I      intronic
chr1:247033541(-) A-I      intronic
chr1:247093987(-) A-I      intronic
chr1:247007944(-) A-I      intronic
chr1:247011923(-) A-I      intronic
chr1:247010508(-) A-I      intronic
chr1:247085865(-) A-I      intronic
chr1:247021390(-) A-I      intronic
chr1:247012138(-) A-I      intronic
chr1:247045053(-) A-I      intronic
chr1:247057288(-) A-I      intronic
chr1:247011911(-) A-I      intronic
chr1:247011583(-) A-I      intronic
chr1:247057710(-) A-I      intronic
chr1:247005896(-) A-I      intronic
chr1:247044992(-) A-I      intronic
chr1:247012113(-) A-I      intronic
chr1:247085878(-) A-I      intronic
chr1:247007914(-) A-I      intronic
chr1:247005067(-) A-I      intronic
chr1:247082759(-) A-I      intronic
chr1:247012150(-) A-I      intronic
chr1:247056229(-) A-I      intronic
chr1:247005859(-) A-I      intronic
chr1:247055994(-) A-I      intronic
chr1:247033689(-) A-I      intronic
chr1:247010151(-) A-I      intronic
chr1:247045040(-) A-I      intronic
chr1:247045233(-) A-I      intronic
chr1:247093169(-) A-I      intronic
chr1:247043126(-) A-I      intronic
chr1:247033549(-) A-I      intronic
chr1:247072085(-) A-I      intronic
chr1:247005161(-) A-I      intronic
chr1:247005301(-) A-I      intronic
chr1:247005762(-) A-I      intronic
chr1:247085874(-) A-I      intronic
chr1:247008004(-) A-I      intronic
chr1:247045483(-) A-I      intronic
chr1:247093514(-) A-I      intronic
chr1:247051954(-) A-I      intronic
chr1:247005760(-) A-I      intronic
chr1:247045064(-) A-I      intronic
chr1:247033648(-) A-I      intronic
chr1:247044974(-) A-I      intronic
chr1:247072075(-) A-I      intronic
chr1:247045464(-) A-I      intronic
chr1:247005827(-) A-I      intronic
chr1:247094004(-) A-I      intronic
chr1:247021533(-) A-I      intronic
chr1:247056207(-) A-I      intronic
chr1:247085600(-) A-I      intronic
chr1:247044991(-) A-I      intronic
chr1:247055895(-) A-I      intronic
chr1:247011784(-) A-I      intronic
chr1:247005821(-) A-I      intronic
chr1:247011584(-) A-I      intronic
chr1:247091366(-) A-I      intronic
chr1:247005718(-) A-I      intronic
chr1:247057249(-) A-I      intronic
chr1:247010584(-) A-I      intronic
chr1:247075059(-) A-I      intronic
chr1:247057387(-) A-I      intronic
chr1:247005088(-) A-I      intronic
chr1:247033498(-) A-I      intronic
chr1:247085875(-) A-I      intronic
chr1:247005681(-) A-I      intronic
chr1:247042882(-) A-I      intronic
chr1:247005639(-) A-I      intronic
chr1:247011654(-) A-I      intronic
chr1:247075702(-) A-I      intronic
chr1:247021400(-) A-I      intronic
chr1:247075738(-) A-I      intronic
chr1:247085599(-) A-I      intronic
chr1:247085975(-) A-I      intronic
chr1:247010960(-) A-I      intronic
chr1:247005858(-) A-I      intronic
chr1:247085499(-) A-I      intronic
chr1:247011691(-) A-I      intronic
chr1:247044956(-) A-I      intronic
chr1:247005929(-) A-I      intronic
chr1:247033489(-) A-I      intronic
chr1:247043018(-) A-I      intronic
chr1:247045057(-) A-I      intronic
chr1:247011687(-) A-I      intronic
chr1:247010899(-) A-I      intronic
chr1:247031547(-) A-I      intronic
chr1:247033543(-) A-I      intronic
chr1:247055887(-) A-I      intronic
chr1:247010479(-) A-I      intronic
chr1:247044895(-) A-I      intronic
chr1:247093982(-) A-I      intronic
chr1:247093271(-) A-I      intronic
chr1:247011924(-) A-I      intronic
chr1:247075703(-) A-I      intronic
chr1:247045480(-) A-I      intronic
chr1:247075698(-) A-I      intronic
chr1:247085895(-) A-I      intronic
chr1:247085827(-) A-I      intronic
chr1:247086120(-) A-I      intronic
chr1:247045496(-) A-I      intronic
chr1:247085899(-) A-I      intronic
chr1:247010930(-) A-I      intronic
chr1:247085915(-) A-I      intronic
chr1:247031821(-) A-I      intronic
chr1:247005086(-) A-I      intronic
chr1:247012040(-) A-I      intronic
chr1:247005316(-) A-I      intronic
chr1:247083359(-) A-I      intronic
chr1:247045438(-) A-I      intronic
chr1:247005255(-) A-I      intronic
chr1:247093579(-) A-I      intronic
chr1:247049463(-) A-I      intronic
chr1:247012114(-) A-I      intronic
chr1:247056042(-) A-I      intronic
chr1:247057470(-) A-I      intronic
chr1:247005166(-) A-I      intronic
chr1:247042867(-) A-I      intronic
chr1:247045028(-) A-I      intronic
chr1:247075535(-) A-I      intronic
chr1:247010192(-) A-I      intronic
chr1:247010590(-) A-I      intronic
chr1:247023476(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED AHCTF1
chr1:247033625(-) A-I intron -    21960545
chr1:247083427(-) A-I intron -    21960545
chr1:247094004(-) A-I intron -    21960545
chr1:247033483(-) A-G intron -    22484847
chr1:247033489(-) A-G intron -    22484847
chr1:247033498(-) A-G intron -    22484847
chr1:247044956(-) A-G intron -    22484847
chr1:247044974(-) A-G intron -    22484847
chr1:247044991(-) A-G intron -    22484847
chr1:247044992(-) A-G intron -    22484847
chr1:247045028(-) A-G intron -    22484847
chr1:247045040(-) A-G intron -    22484847
chr1:247045053(-) A-G intron -    22484847
chr1:247045057(-) A-G intron -    22484847
chr1:247045058(-) A-G intron -    22484847
chr1:247045064(-) A-G intron -    22484847
chr1:247045438(-) A-G intron -    22484847
chr1:247045464(-) A-G intron -    22484847
chr1:247045480(-) A-G intron -    22484847
chr1:247045483(-) A-G intron -    22484847
chr1:247045496(-) A-G intron -    22484847
chr1:247056229(-) A-G intron -    22484847
chr1:247057779(-) T-C intron -    22484847
chr1:247075702(-) A-G intron -    22484847
chr1:247075703(-) A-G intron -    22484847
chr1:247075738(-) A-G intron -    22484847
chr1:247075784(-) G-T intron -    22484847
chr1:247085599(-) A-G intron -    22484847
chr1:247085600(-) A-G intron -    22484847
chr1:247085827(-) A-G intron -    22484847
chr1:247085867(-) A-G intron -    22484847
chr1:247085874(-) A-G intron -    22484847
chr1:247085875(-) A-G intron -    22484847
chr1:247085878(-) A-G intron -    22484847
chr1:247085895(-) A-G intron -    22484847
chr1:247085975(-) A-G intron -    22484847
chr1:247086095(-) A-G intron -    22484847
chr1:247086120(-) A-G intron -    22484847
chr1:247093169(-) A-G intron -    22484847
chr1:247093271(-) A-G intron -    22484847
chr1:247093982(-) A-G intron -    22484847
chr1:247094004(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase AHCTF1
chr1:247002414-247002415(-) m6A 3'UTR//exon       27773535
chr1:247002481-247002482(-) m6A 3'UTR//exon       27773535
chr1:247002503-247002504(-) m6A 3'UTR//exon       27773535
chr1:247002594-247002595(-) m6A 3'UTR//exon       27773535
chr1:247002632-247002633(-) m6A 3'UTR//exon       27773535
chr1:247002991-247002992(-) m6A 3'UTR//exon       24981863
chr1:247003020-247003021(-) m6A 3'UTR//exon       24981863//27773535
chr1:247003451-247003452(-) m6A 3'UTR//exon       24981863
chr1:247003909-247003910(-) m6A 3'UTR//exon       27773535
chr1:247003989-247003990(-) m6A 3'UTR//exon       27773535
chr1:247004152-247004153(-) m6A CDS//exon       24981863//27773535//22608085
chr1:247004162-247004163(-) m6A CDS//exon       24981863//27773535//22608085
chr1:247004178-247004179(-) m6A CDS//exon       24981863//27773535//27371828//22608085
chr1:247004196-247004197(-) m6A CDS//exon       24981863//27773535//27371828//22608085
chr1:247004206-247004207(-) m6A CDS//exon       24981863//27773535//27371828//22608085
chr1:247004297-247004298(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828//22608085
chr1:247006006-247006007(-) m6A 3'UTR//CDS//intron       24981863//27773535//27371828//22608085
chr1:247006011-247006012(-) m6A 3'UTR//CDS//intron       24981863//27773535//27371828
chr1:247006053-247006054(-) m6A 3'UTR//CDS//intron       24981863//27773535//27371828
chr1:247007099-247007100(-) m6A CDS//exon//intron       24981863//27773535
chr1:247007115-247007116(-) m6A CDS//exon//intron       24981863//27773535
chr1:247007130-247007131(-) m6A CDS//exon//intron       24981863//27773535
chr1:247007138-247007139(-) m6A CDS//exon//intron       24981863//27773535
chr1:247012966-247012967(-) m6A CDS//exon       24284625//24981863//27773535//27371828//22608085
chr1:247012971-247012972(-) m6A CDS//exon       24284625//24981863//27773535//27371828//22608085
chr1:247012981-247012982(-) m6A CDS//exon       24284625//24981863//27773535//27371828//22608085
chr1:247013012-247013013(-) m6A CDS//exon       24284625//24981863//27773535//27371828//22608085
chr1:247013078-247013079(-) m6A CDS//exon       24284625//24981863//27773535//27371828//22608085
chr1:247013153-247013154(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr1:247013166-247013167(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr1:247013196-247013197(-) m6A CDS//exon       24284625//24981863//27773535//27371828//22608085
chr1:247013235-247013236(-) m6A CDS//exon       24284625//24981863//27773535//27371828//22608085
chr1:247013379-247013380(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr1:247013455-247013456(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr1:247013508-247013509(-) m6A CDS//exon       24981863//27773535//22608085
chr1:247013696-247013697(-) m6A CDS//exon       24981863//27773535//22608085
chr1:247013738-247013739(-) m6A CDS//exon       24981863//27773535//22608085
chr1:247013754-247013755(-) m6A CDS//exon       24981863//27773535//22608085
chr1:247013817-247013818(-) m6A CDS//exon       24981863//27773535
chr1:247013833-247013834(-) m6A CDS//exon       24981863
chr1:247013845-247013846(-) m6A CDS//exon       24981863
chr1:247013911-247013912(-) m6A CDS//exon       24284625//24981863//22608085
chr1:247013922-247013923(-) m6A CDS//exon       24284625//24981863//22608085
chr1:247013944-247013945(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr1:247013981-247013982(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr1:247014092-247014093(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr1:247014146-247014147(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr1:247014158-247014159(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr1:247014199-247014200(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr1:247014221-247014222(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr1:247014237-247014238(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr1:247014274-247014275(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr1:247014321-247014322(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr1:247014343-247014344(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr1:247014399-247014400(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr1:247014432-247014433(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr1:247014555-247014556(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr1:247014592-247014593(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr1:247014659-247014660(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr1:247024273-247024274(-) m6A CDS//exon       22608085
chr1:247024335-247024336(-) m6A CDS//exon       24284625//24981863//22575960//22608085
chr1:247024346-247024347(-) m6A CDS//exon       24284625//24981863//22575960//22608085
chr1:247024383-247024384(-) m6A CDS//exon       24284625//24981863//22575960//22608085
chr1:247024412-247024413(-) m6A CDS//exon       24284625//24981863//22575960//22608085
chr1:247024432-247024433(-) m6A CDS//exon       24284625//24981863//22608085
chr1:247031099-247031100(-) m6A CDS//exon       27773535
chr1:247031105-247031106(-) m6A CDS//exon       27773535
chr1:247094916-247094917(-) m6A 5'UTR       24209618//27773536
chr1:247094959-247094960(-) m6A 5'UTR       24209618//27371828//27773536//22575960
chr1:247095171-247095172(-) m6A 5'UTR       24209618//24981863//27773536//22575960
chr1:247095253-247095254(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate AHCTF1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H4-3p
Interactor2: AHCTF1

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Targetscan
Support Database RepTar//VmiReg

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