Basic Information:

  VIRBase ID:  

VHID00090209

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-3p:  MIMAT0008402          ATP2C2:  NM_001286527     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H4-3p	ATP2C2
miRBase Accession/Entrez ID	MIMAT0008402	9914
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SPCA2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ATP2C2	chr16:84462897(+) A-I      intronic chr16:84462938(+) A-I      intronic chr16:84469655(+) A-I      intronic chr16:84464127(+) A-I      intronic chr16:84464126(+) A-I      intronic chr16:84462910(+) A-I      intronic chr16:84462915(+) A-I      intronic chr16:84462942(+) A-I      intronic chr16:84462887(+) A-I      intronic chr16:84469700(+) A-I      intronic chr16:84469624(+) A-I      intronic chr16:84416236(+) A-I      intronic chr16:84416238(+) A-I      intronic chr16:84421455(+) A-I      intronic chr16:84462861(+) A-I      intronic chr16:84462993(+) A-I      intronic chr16:84463021(+) A-I      intronic chr16:84465023(+) A-I      intronic chr16:84465034(+) A-I      intronic chr16:84467879(+) A-I      intronic chr16:84469604(+) A-I      intronic chr16:84469614(+) A-I      intronic chr16:84469615(+) A-I      intronic chr16:84469676(+) A-I      intronic chr16:84469692(+) A-I      intronic chr16:84470808(+) A-I      intronic chr16:84470817(+) A-I      intronic chr16:84479013(+) A-I      intronic chr16:84470893(+) A-I      intronic chr16:84470900(+) A-I      intronic chr16:84471331(+) A-I      intronic chr16:84471342(+) A-I      intronic chr16:84471356(+) A-I      intronic chr16:84477531(+) A-I      intronic chr16:84477532(+) A-I      intronic chr16:84477539(+) A-I      intronic chr16:84477610(+) A-I      intronic chr16:84467967(+) A-I      intronic chr16:84464046(+) A-I      intronic chr16:84461229(+) A-I      intronic chr16:84467208(+) A-I      intronic chr16:84466868(+) A-I      intronic chr16:84462899(+) A-I      intronic chr16:84471079(+) A-I      intronic chr16:84437011(+) A-I      intronic chr16:84443289(+) A-I      intronic chr16:84464124(+) A-I      intronic chr16:84427484(+) A-I      intronic chr16:84463011(+) A-I      intronic chr16:84441287(+) A-I      intronic chr16:84467819(+) A-I      intronic chr16:84464206(+) A-I      intronic chr16:84427766(+) A-I      intronic chr16:84458069(+) A-I      intronic chr16:84427664(+) A-I      intronic chr16:84479021(+) A-I      intronic chr16:84466307(+) A-I      intronic chr16:84470941(+) A-I      intronic chr16:84415062(+) A-I      intronic chr16:84467179(+) A-I      intronic chr16:84469358(+) A-I      intronic chr16:84469506(+) A-I      intronic chr16:84467813(+) A-I      intronic chr16:84469155(+) A-I      intronic chr16:84468386(+) A-I      intronic chr16:84463033(+) A-I      intronic chr16:84468204(+) A-I      intronic chr16:84443292(+) A-I      intronic chr16:84485338(+) A-I      intronic chr16:84466327(+) A-I      intronic chr16:84471154(+) A-I      intronic chr16:84437012(+) A-I      intronic chr16:84422378(+) A-I      intronic chr16:84443711(+) A-I      intronic chr16:84466850(+) A-I      intronic chr16:84471142(+) A-I      intronic chr16:84485399(+) A-I      intronic chr16:84470912(+) A-I      intronic chr16:84466730(+) A-I      intronic chr16:84445148(+) A-I      intronic chr16:84471384(+) A-I      intronic chr16:84464201(+) A-I      intronic chr16:84458067(+) A-I      intronic chr16:84463020(+) A-I      intronic chr16:84466909(+) A-I      intronic chr16:84469367(+) A-I      intronic chr16:84467203(+) A-I      intronic chr16:84466388(+) A-I      intronic chr16:84471104(+) A-I      intronic chr16:84464203(+) A-I      intronic chr16:84466731(+) A-I      intronic chr16:84461232(+) A-I      intronic chr16:84483261(+) A-I      intronic chr16:84484287(+) A-I      intronic chr16:84485324(+) A-I      intronic chr16:84483207(+) A-I      intronic chr16:84443717(+) A-I      intronic chr16:84427678(+) A-I      intronic chr16:84483212(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ATP2C2	chr16:84461046(+) A-I intron -    21960545 chr16:84461243(+) A-I intron -    21960545 chr16:84462938(+) A-I intron -    21960545 chr16:84462942(+) A-I intron -    21960545 chr16:84464046(+) A-I intron -    21960545

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ATP2C2	chr16:84492769-84492770(+) m6A CDS//exon       - chr16:84493124-84493125(+) m6A CDS//intron       27371828//22608085 chr16:84493150-84493151(+) m6A CDS//intron       27371828//22608085 chr16:84493377-84493378(+) m6A exon//intron       27371828//22608085 chr16:84493424-84493425(+) m6A exon//intron       27371828//22608085 chr16:84493590-84493591(+) m6A exon//intron       - chr16:84497484-84497485(+) m6A 3'UTR//exon       25456834 chr16:84497502-84497503(+) m6A 3'UTR//exon       25456834 chr16:84497543-84497544(+) m6A 3'UTR//exon       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ATP2C2	Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H4-3p
Interactor2: ATP2C2

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg