Detail Information

Basic Information:


  VIRBase ID:  

VHID00089247

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-3p:           BAAT:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H4-3p BAAT
miRBase
Accession/Entrez ID		 MIMAT0008402 570
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - BACAT//BAT

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR BAAT
chr9:104143141(-) A-I      intronic
chr9:104143195(-) A-I      intronic
chr9:104143762(-) A-I      intronic
chr9:104143065(-) A-I      intronic
chr9:104143163(-) A-I      intronic
chr9:104143131(-) A-I      intronic
chr9:104143553(-) A-I      intronic
chr9:104143547(-) A-I      intronic
chr9:104143124(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED BAAT
chr9:104143131(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase BAAT
chr9:104124040-104124041(-) m6A 3'UTR       24981863
chr9:104124352-104124353(-) m6A 3'UTR       24981863//27773535
chr9:104124372-104124373(-) m6A 3'UTR       24981863//27773535
chr9:104124403-104124404(-) m6A 3'UTR       24981863//27773535
chr9:104124442-104124443(-) m6A 3'UTR       24981863//27773535
chr9:104124501-104124502(-) m6A 3'UTR       24981863//27773535
chr9:104124522-104124523(-) m6A 3'UTR       24981863//27773535
chr9:104124527-104124528(-) m6A 3'UTR       24981863//27773535
chr9:104124566-104124567(-) m6A 3'UTR       24981863//27773535
chr9:104124660-104124661(-) m6A 3'UTR       24981863//27773535
chr9:104124704-104124705(-) m6A 3'UTR       24981863//27773535
chr9:104124778-104124779(-) m6A CDS       24981863//27773535
chr9:104124871-104124872(-) m6A CDS       24981863//27773535
chr9:104124909-104124910(-) m6A CDS       24981863//27773535
chr9:104124917-104124918(-) m6A CDS       24981863//27773535
chr9:104124928-104124929(-) m6A CDS       24981863//27773535
chr9:104124940-104124941(-) m6A CDS       24981863//27773535
chr9:104124952-104124953(-) m6A CDS       24981863//27773535
chr9:104124978-104124979(-) m6A CDS       24981863//27773535
chr9:104125065-104125066(-) m6A CDS       24981863//27773535
chr9:104125188-104125189(-) m6A CDS       24981863//27773535
chr9:104125243-104125244(-) m6A CDS       24981863//27773535
chr9:104130410-104130411(-) m6A CDS       24981863//27773535
chr9:104133342-104133343(-) m6A CDS       24981863//27773535
chr9:104133368-104133369(-) m6A CDS       24981863//27773535
chr9:104133416-104133417(-) m6A CDS       24981863//27773535
chr9:104133437-104133438(-) m6A CDS       24981863//27773535
chr9:104133510-104133511(-) m6A CDS       24981863//27773535
chr9:104133561-104133562(-) m6A CDS       24981863//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate BAAT
Exosome Blood     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H4-3p
Interactor2: BAAT

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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