Basic Information:

  VIRBase ID:  

VHID00088906

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-5p:  MIMAT0008401          TET3:  NM_001366022     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H4-5p	TET3
miRBase Accession/Entrez ID	MIMAT0008401	200424
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BEFAHRS//hCG_40738

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TET3	chr2:74291778(+) A-I      intronic chr2:74297975(+) A-I      intronic chr2:74297846(+) A-I      intronic chr2:74296949(+) A-I      intronic chr2:74293066(+) A-I      intronic chr2:74292979(+) A-I      intronic chr2:74291627(+) A-I      intronic chr2:74279952(+) A-I      intronic chr2:74279942(+) A-I      intronic chr2:74279850(+) A-I      intronic chr2:74279841(+) A-I      intronic chr2:74279327(+) A-I      intronic chr2:74279316(+) A-I      intronic chr2:74279186(+) A-I      intronic chr2:74325923(+) A-I      intronic chr2:74325893(+) A-I      intronic chr2:74325886(+) A-I      intronic chr2:74323780(+) A-I      intronic chr2:74323710(+) A-I      intronic chr2:74312063(+) A-I      intronic chr2:74312044(+) A-I      intronic chr2:74311913(+) A-I      intronic chr2:74311911(+) A-I      intronic chr2:74311902(+) A-I      intronic chr2:74311765(+) A-I      intronic chr2:74311729(+) A-I      intronic chr2:74311719(+) A-I      intronic chr2:74311706(+) A-I      intronic chr2:74311705(+) A-I      intronic chr2:74311697(+) A-I      intronic chr2:74311628(+) A-I      intronic chr2:74311599(+) A-I      intronic chr2:74311529(+) A-I      intronic chr2:74311512(+) A-I      intronic chr2:74297995(+) A-I      intronic chr2:74311973(+) A-I      intronic chr2:74316117(+) A-I      intronic chr2:74323741(+) A-I      intronic chr2:74315495(+) A-I      intronic chr2:74311907(+) A-I      intronic chr2:74325824(+) A-I      intronic chr2:74323748(+) A-I      intronic chr2:74311901(+) A-I      intronic chr2:74313888(+) A-I      intronic chr2:74313714(+) A-I      intronic chr2:74313725(+) A-I      intronic chr2:74313883(+) A-I      intronic chr2:74313774(+) A-I      intronic chr2:74313873(+) A-I      intronic chr2:74313838(+) A-I      intronic chr2:74313752(+) A-I      intronic chr2:74313814(+) A-I      intronic chr2:74313770(+) A-I      intronic chr2:74313863(+) A-I      intronic chr2:74313686(+) A-I      intronic chr2:74313878(+) A-I      intronic chr2:74325821(+) A-I      intronic chr2:74323655(+) A-I      intronic chr2:74313730(+) A-I      intronic chr2:74313720(+) A-I      intronic chr2:74313897(+) A-I      intronic chr2:74313715(+) A-I      intronic chr2:74313821(+) A-I      intronic chr2:74313837(+) A-I      intronic chr2:74313843(+) A-I      intronic chr2:74313778(+) A-I      intronic chr2:74313676(+) A-I      intronic chr2:74313853(+) A-I      intronic chr2:74312050(+) A-I      intronic chr2:74325881(+) A-I      intronic chr2:74312049(+) A-I      intronic chr2:74311914(+) A-I      intronic chr2:74279744(+) A-I      intronic chr2:74313796(+) A-I      intronic chr2:74290954(+) A-I      intronic chr2:74279210(+) A-I      intronic chr2:74312041(+) A-I      intronic chr2:74279877(+) A-I      intronic chr2:74311921(+) A-I      intronic chr2:74279181(+) A-I      intronic chr2:74323883(+) A-I      intronic chr2:74325847(+) A-I      intronic chr2:74323712(+) A-I      intronic chr2:74311732(+) A-I      intronic chr2:74325846(+) A-I      intronic chr2:74297838(+) A-I      intronic chr2:74325752(+) A-I      intronic chr2:74279252(+) A-I      intronic chr2:74311910(+) A-I      intronic chr2:74296947(+) A-I      intronic chr2:74277728(+) A-I      intronic chr2:74311898(+) A-I      intronic chr2:74311553(+) A-I      intronic chr2:74325850(+) A-I      intronic chr2:74279236(+) A-I      intronic chr2:74323756(+) A-I      intronic chr2:74311974(+) A-I      intronic chr2:74279375(+) A-I      intronic chr2:74302718(+) A-I      intronic chr2:74279846(+) A-I      intronic chr2:74279389(+) A-I      intronic chr2:74312032(+) A-I      intronic chr2:74293091(+) A-I      intronic chr2:74299385(+) A-I      intronic chr2:74324206(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TET3	chr2:74311930(+) A-I intron -    22327324 chr2:74311974(+) A-I intron -    22327324 chr2:74314002(+) A-I intron -    22327324 chr2:74314003(+) A-I intron -    22327324 chr2:74313676(+) A-I intron -    22028664 chr2:74313686(+) A-I intron -    22028664 chr2:74313714(+) A-I intron -    22028664 chr2:74313715(+) A-I intron -    22028664 chr2:74313720(+) A-I intron -    22028664 chr2:74313725(+) A-I intron -    22028664 chr2:74313730(+) A-I intron -    22028664 chr2:74313752(+) A-I intron -    22028664 chr2:74313770(+) A-I intron -    22028664 chr2:74313774(+) A-I intron -    22028664 chr2:74313778(+) A-I intron -    22028664 chr2:74313796(+) A-I intron -    22028664 chr2:74313814(+) A-I intron -    22028664 chr2:74313821(+) A-I intron -    22028664 chr2:74313837(+) A-I intron -    22028664 chr2:74313838(+) A-I intron -    22028664 chr2:74313843(+) A-I intron -    22028664 chr2:74313853(+) A-I intron -    22028664 chr2:74313863(+) A-I intron -    22028664 chr2:74313873(+) A-I intron -    22028664 chr2:74313878(+) A-I intron -    22028664 chr2:74313883(+) A-I intron -    22028664 chr2:74313888(+) A-I intron -    22028664 chr2:74313897(+) A-I intron -    22028664 chr2:74313971(+) A-I intron -    21960545 chr2:74314047(+) A-I intron -    21960545 chr2:74311338(+) A-G intron -    22484847 chr2:74311382(+) A-G intron -    22484847 chr2:74312152(+) A-G intron -    22484847 chr2:74312162(+) A-G intron -    22484847 chr2:74312167(+) A-G intron -    22484847 chr2:74312194(+) A-G intron -    22484847 chr2:74314002(+) A-G intron -    22484847 chr2:74314003(+) A-G intron -    22484847 chr2:74322714(+) A-G intron -    22484847 chr2:74277728(+) A-G intron -    22484847 chr2:74279181(+) A-G intron -    22484847 chr2:74279207(+) A-G intron -    22484847 chr2:74279210(+) A-G intron -    22484847 chr2:74279236(+) A-G intron -    22484847 chr2:74279375(+) A-G intron -    22484847 chr2:74279389(+) A-G intron -    22484847 chr2:74279743(+) A-G intron -    22484847 chr2:74279876(+) A-G intron -    22484847 chr2:74279877(+) A-G intron -    22484847 chr2:74282288(+) G-A intron -    22484847 chr2:74282306(+) A-C intron -    22484847 chr2:74291791(+) A-G intron -    22484847 chr2:74293091(+) A-G intron -    22484847 chr2:74296947(+) A-G intron -    22484847 chr2:74297838(+) A-G intron -    22484847 chr2:74306262(+) T-C intron -    22484847 chr2:74311598(+) G-T intron -    22484847 chr2:74311599(+) A-T intron -    22484847 chr2:74311732(+) A-G intron -    22484847 chr2:74311898(+) A-G intron -    22484847 chr2:74311903(+) A-G intron -    22484847 chr2:74311907(+) A-G intron -    22484847 chr2:74311910(+) A-G intron -    22484847 chr2:74311921(+) A-G intron -    22484847 chr2:74311930(+) A-G intron -    22484847 chr2:74311933(+) A-G intron -    22484847 chr2:74311964(+) A-G intron -    22484847 chr2:74311973(+) A-G intron -    22484847 chr2:74311974(+) A-G intron -    22484847 chr2:74311994(+) A-G intron -    22484847 chr2:74312007(+) A-G intron -    22484847 chr2:74312041(+) A-G intron -    22484847 chr2:74312042(+) A-G intron -    22484847 chr2:74312049(+) A-G intron -    22484847 chr2:74312050(+) A-G intron -    22484847 chr2:74323655(+) A-G intron -    22484847 chr2:74323712(+) A-G intron -    22484847 chr2:74323756(+) A-G intron -    22484847 chr2:74324057(+) A-G intron -    22484847 chr2:74325752(+) A-G intron -    22484847 chr2:74325821(+) A-G intron -    22484847 chr2:74325824(+) A-G intron -    22484847 chr2:74325838(+) A-G intron -    22484847 chr2:74325847(+) A-G intron -    22484847 chr2:74325850(+) A-G intron -    22484847 chr2:74325881(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TET3	chr2:74213567-74213568(+) m6A CDS       - chr2:74213732-74213733(+) m6A CDS//exon       24284625//24209618//25456834//24981863 chr2:74213784-74213785(+) m6A CDS//exon       24284625//24209618//24981863//22575960 chr2:74220345-74220346(+) m6A exon//intron       - chr2:74230274-74230275(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74273433-74273434(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74273453-74273454(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74273477-74273478(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74273535-74273536(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74273551-74273552(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74273573-74273574(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr2:74273710-74273711(+) m6A CDS       24284625//25456834//24981863//22575960 chr2:74273744-74273745(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr2:74273757-74273758(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr2:74273798-74273799(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr2:74273847-74273848(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr2:74274095-74274096(+) m6A CDS       24284625//24981863 chr2:74274109-74274110(+) m6A CDS       24284625//24981863 chr2:74274334-74274335(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74274429-74274430(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74274619-74274620(+) m6A CDS//exon       24284625//24209618 chr2:74274666-74274667(+) m6A CDS//exon       24284625//24209618 chr2:74274758-74274759(+) m6A CDS//exon       24284625 chr2:74275026-74275027(+) m6A CDS//exon       24284625//24209618//24981863 chr2:74275064-74275065(+) m6A CDS//exon       24284625//24209618//24981863 chr2:74275244-74275245(+) m6A CDS//exon       24284625//24209618//22575960 chr2:74275253-74275254(+) m6A CDS//exon       24284625//24209618//22575960 chr2:74275261-74275262(+) m6A CDS//exon       24284625//24209618//22575960 chr2:74275380-74275381(+) m6A CDS//exon       24284625//24209618//24981863//22575960 chr2:74275409-74275410(+) m6A CDS//exon       24284625//24981863//22575960 chr2:74275463-74275464(+) m6A CDS//exon       24284625//24981863//22575960 chr2:74275487-74275488(+) m6A CDS//exon       24284625//24981863//22575960 chr2:74300751-74300752(+) m6A CDS//exon       24284625 chr2:74315086-74315087(+) m6A CDS       24284625 chr2:74326733-74326734(+) m6A CDS       24284625 chr2:74327585-74327586(+) m6A CDS       24284625//24981863 chr2:74327678-74327679(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr2:74327873-74327874(+) m6A CDS       24284625//22575960 chr2:74328056-74328057(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74328119-74328120(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74328172-74328173(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74328204-74328205(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74328222-74328223(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr2:74328259-74328260(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr2:74328447-74328448(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr2:74328473-74328474(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr2:74328575-74328576(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74328587-74328588(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74328641-74328642(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr2:74328725-74328726(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr2:74328836-74328837(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74328843-74328844(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74328863-74328864(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74329007-74329008(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74329141-74329142(+) m1A CDS       26863196 chr2:74329192-74329193(+) m1A CDS       26863196 chr2:74329235-74329236(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr2:74329462-74329463(+) m6A 3'UTR       24284625//24209618//24981863 chr2:74329470-74329471(+) m6A 3'UTR       24284625//24209618//24981863 chr2:74329520-74329521(+) m6A 3'UTR       24284625//24209618//24981863 chr2:74329937-74329938(+) m6A 3'UTR       - chr2:74330339-74330340(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr2:74330351-74330352(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr2:74330426-74330427(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74330472-74330473(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74330526-74330527(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr2:74330620-74330621(+) m6A 3'UTR       24981863 chr2:74333330-74333331(+) m6A 3'UTR       - chr2:74334162-74334163(+) m6A 3'UTR       - chr2:74334223-74334224(+) m6A 3'UTR       - chr2:74334229-74334230(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TET3	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hsv1-miR-H4-5p	Topotecan       60700

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H4-5p
Interactor2: TET3

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg