Detail Information

Basic Information:


  VIRBase ID:  

VHID00088878

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-5p:           LONRF2:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H4-5p LONRF2
miRBase
Accession/Entrez ID		 MIMAT0008401 164832
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - RNF192

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LONRF2
chr2:100922655(-) A-I      intronic
chr2:100922648(-) A-I      intronic
chr2:100923450(-) A-I      intronic
chr2:100923561(-) A-I      intronic
chr2:100924613(-) A-I      intronic
chr2:100924642(-) A-I      intronic
chr2:100906538(-) A-I      intronic
chr2:100923562(-) A-I      intronic
chr2:100923521(-) A-I      intronic
chr2:100920749(-) A-I      intronic
chr2:100924710(-) A-I      intronic
chr2:100922579(-) A-I      intronic
chr2:100924750(-) A-I      intronic
chr2:100923654(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LONRF2
chr2:100920613(-) A-I intron -    21960545
chr2:100924750(-) A-I intron -    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LONRF2
chr2:100890443-100890444(-) m6A 3'UTR       22608085
chr2:100891259-100891260(-) m6A 3'UTR       24981863
chr2:100891525-100891526(-) m6A 3'UTR       24981863//22608085
chr2:100891556-100891557(-) m6A 3'UTR       24981863//22608085
chr2:100891566-100891567(-) m6A 3'UTR       24981863//22608085
chr2:100891576-100891577(-) m6A 3'UTR       24981863//22608085
chr2:100891612-100891613(-) m6A 3'UTR       24981863//22608085
chr2:100891649-100891650(-) m6A 3'UTR       24981863//22608085
chr2:100891699-100891700(-) m6A 3'UTR       24981863//22608085
chr2:100891746-100891747(-) m6A 3'UTR       24981863//22608085
chr2:100891822-100891823(-) m6A 3'UTR       24981863//27371828//22608085
chr2:100897729-100897730(-) m6A 3'UTR       24981863
chr2:100897739-100897740(-) m6A 3'UTR       24981863
chr2:100897750-100897751(-) m6A 3'UTR       24981863
chr2:100897758-100897759(-) m6A 3'UTR       24981863
chr2:100897764-100897765(-) m6A 3'UTR       24981863
chr2:100897784-100897785(-) m6A 3'UTR       24981863
chr2:100900349-100900350(-) m6A 3'UTR       22608085
chr2:100900362-100900363(-) m6A 3'UTR       22608085
chr2:100900469-100900470(-) m6A 3'UTR       22608085
chr2:100900531-100900532(-) m6A 3'UTR       24981863//22608085
chr2:100900628-100900629(-) m6A 3'UTR       24981863//22608085
chr2:100938580-100938581(-) m6A 5'UTR       27773536
chr2:100938645-100938646(-) m6A 5'UTR       27773536
chr2:100938855-100938856(-) m6A 5'UTR       27371828//27773536
chr2:100938911-100938912(-) m6A 5'UTR       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate LONRF2
Cytosol K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hsv1-miR-H4-5p
Topotecan       60700

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H4-5p
Interactor2: LONRF2

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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