Basic Information:

  VIRBase ID:  

VHID00088836

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-5p:  MIMAT0008401          B3GALNT2:  NM_152490     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H4-5p	B3GALNT2
miRBase Accession/Entrez ID	MIMAT0008401	148789
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	B3GalNAc-T2//MDDGA11

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	B3GALNT2	chr1:235663655(-) A-I      intronic chr1:235641542(-) A-I      intronic chr1:235641565(-) A-I      intronic chr1:235648798(-) A-I      intronic chr1:235627041(-) A-I      ncRNA chr1:235627004(-) A-I      ncRNA chr1:235648722(-) A-I      intronic chr1:235648804(-) A-I      intronic chr1:235648797(-) A-I      intronic chr1:235648723(-) A-I      intronic chr1:235641490(-) A-I      intronic chr1:235641544(-) A-I      intronic chr1:235640084(-) A-I      intronic chr1:235639509(-) A-I      intronic chr1:235639481(-) A-I      intronic chr1:235639461(-) A-I      intronic chr1:235641564(-) A-I      intronic chr1:235641501(-) A-I      intronic chr1:235641533(-) A-I      intronic chr1:235641439(-) A-I      intronic chr1:235638420(-) A-I      intronic chr1:235641536(-) A-I      intronic chr1:235641539(-) A-I      intronic chr1:235641540(-) A-I      intronic chr1:235663649(-) A-I      intronic chr1:235661987(-) A-I      intronic chr1:235656973(-) A-I      intronic chr1:235661985(-) A-I      intronic chr1:235660148(-) A-I      intronic chr1:235663636(-) A-I      intronic chr1:235663633(-) A-I      intronic chr1:235659952(-) A-I      intronic chr1:235659941(-) A-I      intronic chr1:235657003(-) A-I      intronic chr1:235650364(-) A-I      intronic chr1:235649307(-) A-I      intronic chr1:235641545(-) A-I      intronic chr1:235638490(-) A-I      intronic chr1:235638594(-) A-I      intronic chr1:235639467(-) A-I      intronic chr1:235639479(-) A-I      intronic chr1:235639640(-) A-I      intronic chr1:235639664(-) A-I      intronic chr1:235639724(-) A-I      intronic chr1:235639994(-) A-I      intronic chr1:235640058(-) A-I      intronic chr1:235640162(-) A-I      intronic chr1:235640164(-) A-I      intronic chr1:235640241(-) A-I      intronic chr1:235641466(-) A-I      intronic chr1:235641484(-) A-I      intronic chr1:235641507(-) A-I      intronic chr1:235641587(-) A-I      intronic chr1:235641588(-) A-I      intronic chr1:235641646(-) A-I      intronic chr1:235646921(-) A-I      intronic chr1:235646940(-) A-I      intronic chr1:235648879(-) A-I      intronic chr1:235649239(-) A-I      intronic chr1:235649295(-) A-I      intronic chr1:235650413(-) A-I      intronic chr1:235650437(-) A-I      intronic chr1:235650475(-) A-I      intronic chr1:235651187(-) A-I      intronic chr1:235651314(-) A-I      intronic chr1:235652115(-) A-I      intronic chr1:235652285(-) A-I      intronic chr1:235652286(-) A-I      intronic chr1:235653716(-) A-I      intronic chr1:235653763(-) A-I      intronic chr1:235656976(-) A-I      intronic chr1:235656985(-) A-I      intronic chr1:235657041(-) A-I      intronic chr1:235657876(-) A-I      intronic chr1:235659862(-) A-I      intronic chr1:235660044(-) A-I      intronic chr1:235660088(-) A-I      intronic chr1:235663542(-) A-I      intronic chr1:235663575(-) A-I      intronic chr1:235663576(-) A-I      intronic chr1:235663588(-) A-I      intronic chr1:235663627(-) A-I      intronic chr1:235663630(-) A-I      intronic chr1:235665418(-) A-I      intronic chr1:235637908(-) A-I      intronic chr1:235627019(-) A-I      ncRNA chr1:235626978(-) A-I      ncRNA chr1:235622714(-) A-I      intronic chr1:235622783(-) A-I      intronic chr1:235622809(-) A-I      intronic chr1:235622822(-) A-I      intronic chr1:235659863(-) A-I      intronic chr1:235622933(-) A-I      intronic chr1:235623207(-) A-I      intronic chr1:235623338(-) A-I      intronic chr1:235623538(-) A-I      intronic chr1:235623688(-) A-I      intronic chr1:235623693(-) A-I      intronic chr1:235623728(-) A-I      intronic chr1:235624054(-) A-I      intronic chr1:235624968(-) A-I      intronic chr1:235624977(-) A-I      intronic chr1:235625075(-) A-I      intronic chr1:235625080(-) A-I      intronic chr1:235625085(-) A-I      intronic chr1:235629825(-) A-I      intronic chr1:235629848(-) A-I      intronic chr1:235630408(-) A-I      intronic chr1:235630421(-) A-I      intronic chr1:235630521(-) A-I      intronic chr1:235630923(-) A-I      intronic chr1:235631032(-) A-I      intronic chr1:235631259(-) A-I      intronic chr1:235631326(-) A-I      intronic chr1:235632928(-) A-I      intronic chr1:235633407(-) A-I      intronic chr1:235633887(-) A-I      intronic chr1:235635128(-) A-I      intronic chr1:235626948(-) A-I      ncRNA chr1:235637962(-) A-I      intronic chr1:235637968(-) A-I      intronic chr1:235637970(-) A-I      intronic chr1:235638052(-) A-I      intronic chr1:235638053(-) A-I      intronic chr1:235638421(-) A-I      intronic chr1:235638485(-) A-I      intronic chr1:235624190(-) A-I      intronic chr1:235638013(-) A-I      intronic chr1:235653675(-) A-I      intronic chr1:235663736(-) A-I      intronic chr1:235640079(-) A-I      intronic chr1:235639569(-) A-I      intronic chr1:235640335(-) A-I      intronic chr1:235650360(-) A-I      intronic chr1:235629850(-) A-I      intronic chr1:235657827(-) A-I      intronic chr1:235622774(-) A-I      intronic chr1:235630565(-) A-I      intronic chr1:235651134(-) A-I      intronic chr1:235640246(-) A-I      intronic chr1:235661939(-) A-I      intronic chr1:235648762(-) A-I      intronic chr1:235648754(-) A-I      intronic chr1:235639579(-) A-I      intronic chr1:235622666(-) A-I      intronic chr1:235651300(-) A-I      intronic chr1:235629757(-) A-I      intronic chr1:235640289(-) A-I      intronic chr1:235652268(-) A-I      intronic chr1:235651177(-) A-I      intronic chr1:235640103(-) A-I      intronic chr1:235639281(-) A-I      intronic chr1:235638493(-) A-I      intronic chr1:235651318(-) A-I      intronic chr1:235633885(-) A-I      intronic chr1:235623504(-) A-I      intronic chr1:235641601(-) A-I      intronic chr1:235639641(-) A-I      intronic chr1:235656873(-) A-I      intronic chr1:235630589(-) A-I      intronic chr1:235652295(-) A-I      intronic chr1:235639974(-) A-I      intronic chr1:235640219(-) A-I      intronic chr1:235652329(-) A-I      intronic chr1:235657054(-) A-I      intronic chr1:235652238(-) A-I      intronic chr1:235639480(-) A-I      intronic chr1:235639589(-) A-I      intronic chr1:235663699(-) A-I      intronic chr1:235651754(-) A-I      intronic chr1:235639615(-) A-I      intronic chr1:235639777(-) A-I      intronic chr1:235653816(-) A-I      intronic chr1:235633847(-) A-I      intronic chr1:235657882(-) A-I      intronic chr1:235652272(-) A-I      intronic chr1:235633686(-) A-I      intronic chr1:235640028(-) A-I      intronic chr1:235624006(-) A-I      intronic chr1:235638122(-) A-I      intronic chr1:235651215(-) A-I      intronic chr1:235653788(-) A-I      intronic chr1:235639578(-) A-I      intronic chr1:235638127(-) A-I      intronic chr1:235650469(-) A-I      intronic chr1:235638412(-) A-I      intronic chr1:235639993(-) A-I      intronic chr1:235657053(-) A-I      intronic chr1:235633296(-) A-I      intronic chr1:235641572(-) A-I      intronic chr1:235639986(-) A-I      intronic chr1:235626977(-) A-I      ncRNA chr1:235627018(-) A-I      ncRNA chr1:235627045(-) A-I      ncRNA chr1:235638452(-) A-I      intronic chr1:235622775(-) A-I      intronic chr1:235639538(-) A-I      intronic chr1:235651278(-) A-I      intronic chr1:235633487(-) A-I      intronic chr1:235631054(-) A-I      intronic chr1:235639719(-) A-I      intronic chr1:235653665(-) A-I      intronic chr1:235641474(-) A-I      intronic chr1:235633411(-) A-I      intronic chr1:235656868(-) A-I      intronic chr1:235650287(-) A-I      intronic chr1:235633877(-) A-I      intronic chr1:235633471(-) A-I      intronic chr1:235624131(-) A-I      intronic chr1:235640157(-) A-I      intronic chr1:235641506(-) A-I      intronic chr1:235623959(-) A-I      intronic chr1:235622885(-) A-I      intronic chr1:235623169(-) A-I      intronic chr1:235629870(-) A-I      intronic chr1:235641447(-) A-I      intronic chr1:235653031(-) A-I      intronic chr1:235648727(-) A-I      intronic chr1:235648758(-) A-I      intronic chr1:235624188(-) A-I      intronic chr1:235651196(-) A-I      intronic chr1:235638051(-) A-I      intronic chr1:235625116(-) A-I      intronic chr1:235651355(-) A-I      intronic chr1:235624074(-) A-I      intronic chr1:235639909(-) A-I      intronic chr1:235652287(-) A-I      intronic chr1:235653652(-) A-I      intronic chr1:235630475(-) A-I      intronic chr1:235630910(-) A-I      intronic chr1:235639558(-) A-I      intronic chr1:235641497(-) A-I      intronic chr1:235660125(-) A-I      intronic chr1:235631227(-) A-I      intronic chr1:235653604(-) A-I      intronic chr1:235630629(-) A-I      intronic chr1:235633773(-) A-I      intronic chr1:235660126(-) A-I      intronic chr1:235650400(-) A-I      intronic chr1:235623279(-) A-I      intronic chr1:235653809(-) A-I      intronic chr1:235629847(-) A-I      intronic chr1:235640019(-) A-I      intronic chr1:235630576(-) A-I      intronic chr1:235648705(-) A-I      intronic chr1:235622803(-) A-I      intronic chr1:235635074(-) A-I      intronic chr1:235623347(-) A-I      intronic chr1:235624065(-) A-I      intronic chr1:235623952(-) A-I      intronic chr1:235640303(-) A-I      intronic chr1:235623213(-) A-I      intronic chr1:235635075(-) A-I      intronic chr1:235639644(-) A-I      intronic chr1:235657058(-) A-I      intronic chr1:235640018(-) A-I      intronic chr1:235651242(-) A-I      intronic chr1:235651268(-) A-I      intronic chr1:235630582(-) A-I      intronic chr1:235641548(-) A-I      intronic chr1:235638130(-) A-I      intronic chr1:235663766(-) A-I      intronic chr1:235649285(-) A-I      intronic chr1:235624172(-) A-I      intronic chr1:235641480(-) A-I      intronic chr1:235633367(-) A-I      intronic chr1:235638488(-) A-I      intronic chr1:235639785(-) A-I      intronic chr1:235633687(-) A-I      intronic chr1:235625008(-) A-I      intronic chr1:235651923(-) A-I      intronic chr1:235624928(-) A-I      intronic chr1:235649324(-) A-I      intronic chr1:235663530(-) A-I      intronic chr1:235633829(-) A-I      intronic chr1:235633761(-) A-I      intronic chr1:235639248(-) A-I      intronic chr1:235660082(-) A-I      intronic chr1:235652244(-) A-I      intronic chr1:235640122(-) A-I      intronic chr1:235653661(-) A-I      intronic chr1:235656919(-) A-I      intronic chr1:235657047(-) A-I      intronic chr1:235648790(-) A-I      intronic chr1:235625004(-) A-I      intronic chr1:235630491(-) A-I      intronic chr1:235623253(-) A-I      intronic chr1:235640240(-) A-I      intronic chr1:235652355(-) A-I      intronic chr1:235625006(-) A-I      intronic chr1:235651263(-) A-I      intronic chr1:235633674(-) A-I      intronic chr1:235641395(-) A-I      intronic chr1:235638023(-) A-I      intronic chr1:235622823(-) A-I      intronic chr1:235641465(-) A-I      intronic chr1:235622746(-) A-I      intronic chr1:235639287(-) A-I      intronic chr1:235636508(-) A-I      intronic chr1:235649325(-) A-I      intronic chr1:235625101(-) A-I      intronic chr1:235624995(-) A-I      intronic chr1:235649320(-) A-I      intronic chr1:235636292(-) A-I      intronic chr1:235637971(-) A-I      intronic chr1:235630483(-) A-I      intronic chr1:235640054(-) A-I      intronic chr1:235653584(-) A-I      intronic chr1:235630517(-) A-I      intronic chr1:235640057(-) A-I      intronic chr1:235633371(-) A-I      intronic chr1:235635114(-) A-I      intronic chr1:235624085(-) A-I      intronic chr1:235636500(-) A-I      intronic chr1:235633458(-) A-I      intronic chr1:235648703(-) A-I      intronic chr1:235653714(-) A-I      intronic chr1:235622713(-) A-I      intronic chr1:235638586(-) A-I      intronic chr1:235622793(-) A-I      intronic chr1:235638400(-) A-I      intronic chr1:235639546(-) A-I      intronic chr1:235640083(-) A-I      intronic chr1:235636499(-) A-I      intronic chr1:235622776(-) A-I      intronic chr1:235648794(-) A-I      intronic chr1:235638585(-) A-I      intronic chr1:235630497(-) A-I      intronic chr1:235633822(-) A-I      intronic chr1:235657052(-) A-I      intronic chr1:235650393(-) A-I      intronic chr1:235649403(-) A-I      intronic chr1:235652292(-) A-I      intronic chr1:235625102(-) A-I      intronic chr1:235641573(-) A-I      intronic chr1:235633738(-) A-I      intronic chr1:235648692(-) A-I      intronic chr1:235649299(-) A-I      intronic chr1:235638719(-) A-I      intronic chr1:235630543(-) A-I      intronic chr1:235622929(-) A-I      intronic chr1:235657002(-) A-I      intronic chr1:235624954(-) A-I      intronic chr1:235633808(-) A-I      intronic chr1:235638481(-) A-I      intronic chr1:235639921(-) A-I      intronic chr1:235629833(-) A-I      intronic chr1:235651260(-) A-I      intronic chr1:235641404(-) A-I      intronic chr1:235622931(-) A-I      intronic chr1:235621758(-) A-I      intronic chr1:235631999(-) A-I      intronic chr1:235633850(-) A-I      intronic chr1:235622884(-) A-I      intronic chr1:235638411(-) A-I      intronic chr1:235651304(-) A-I      intronic chr1:235630583(-) A-I      intronic chr1:235656840(-) A-I      intronic chr1:235640160(-) A-I      intronic chr1:235648741(-) A-I      intronic chr1:235630897(-) A-I      intronic chr1:235663784(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	B3GALNT2	chr1:235624131(-) A-I intron -    21960545 chr1:235648794(-) A-I intron -    21960545 chr1:235652287(-) A-I intron -    21960545 chr1:235622713(-) A-G intron -    22484847 chr1:235622775(-) A-G intron -    22484847 chr1:235622776(-) A-G intron -    22484847 chr1:235622929(-) A-G intron -    22484847 chr1:235622931(-) A-G intron -    22484847 chr1:235627946(-) A-G intron -    22484847 chr1:235630582(-) A-G intron -    22484847 chr1:235633367(-) A-G intron -    22484847 chr1:235633371(-) A-G intron -    22484847 chr1:235633411(-) A-G intron -    22484847 chr1:235633458(-) A-G intron -    22484847 chr1:235633471(-) A-G intron -    22484847 chr1:235633686(-) A-G intron -    22484847 chr1:235633687(-) A-G intron -    22484847 chr1:235633738(-) A-G intron -    22484847 chr1:235633761(-) A-G intron -    22484847 chr1:235633850(-) A-G intron -    22484847 chr1:235633885(-) A-G intron -    22484847 chr1:235637971(-) A-G intron -    22484847 chr1:235638051(-) A-G intron -    22484847 chr1:235639281(-) A-G intron -    22484847 chr1:235639287(-) A-G intron -    22484847 chr1:235639578(-) A-G intron -    22484847 chr1:235639579(-) A-G intron -    22484847 chr1:235639615(-) A-G intron -    22484847 chr1:235639993(-) A-G intron -    22484847 chr1:235640018(-) A-G intron -    22484847 chr1:235640122(-) A-G intron -    22484847 chr1:235641572(-) A-G intron -    22484847 chr1:235641573(-) A-G intron -    22484847 chr1:235648727(-) A-G intron -    22484847 chr1:235648754(-) A-G intron -    22484847 chr1:235648758(-) A-G intron -    22484847 chr1:235648762(-) A-G intron -    22484847 chr1:235649299(-) A-G intron -    22484847 chr1:235649320(-) A-G intron -    22484847 chr1:235649324(-) A-G intron -    22484847 chr1:235649325(-) A-G intron -    22484847 chr1:235650287(-) A-G intron -    22484847 chr1:235650400(-) A-G intron -    22484847 chr1:235651242(-) A-G intron -    22484847 chr1:235651260(-) A-G intron -    22484847 chr1:235652238(-) A-G intron -    22484847 chr1:235652244(-) A-G intron -    22484847 chr1:235652287(-) A-G intron -    22484847 chr1:235652295(-) A-G intron -    22484847 chr1:235652355(-) A-G intron -    22484847 chr1:235653584(-) A-G intron -    22484847 chr1:235653661(-) A-G intron -    22484847 chr1:235656840(-) A-G intron -    22484847 chr1:235656868(-) A-G intron -    22484847 chr1:235656873(-) A-G intron -    22484847 chr1:235657002(-) A-G intron -    22484847 chr1:235657047(-) A-G intron -    22484847 chr1:235657053(-) A-G intron -    22484847 chr1:235660082(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	B3GALNT2	chr1:235613384-235613385(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr1:235613403-235613404(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr1:235613431-235613432(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr1:235613514-235613515(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:235613565-235613566(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr1:235613574-235613575(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr1:235613583-235613584(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr1:235613621-235613622(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:235613630-235613631(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:235616416-235616417(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr1:235617475-235617476(-) m6A CDS       22575960 chr1:235617516-235617517(-) m6A CDS       22575960 chr1:235667544-235667545(-) m6A CDS//exon       24209618//27371828//27773536//22575960 chr1:235667724-235667725(-) m6A 5'UTR//exon       25456834//24981863//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	B3GALNT2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hsv1-miR-H4-5p	Topotecan       60700

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H4-5p
Interactor2: B3GALNT2

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg