Detail Information

Basic Information:


  VIRBase ID:  

VHID00088710

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-5p:           THEM4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H4-5p THEM4
miRBase
Accession/Entrez ID		 MIMAT0008401 117145
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - CTMP

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR THEM4
chr1:151866419(-) A-I      intronic
chr1:151847007(-) A-I      3'UTR
chr1:151865766(-) A-I      intronic
chr1:151866393(-) A-I      intronic
chr1:151847018(-) A-I      3'UTR
chr1:151866401(-) A-I      intronic
chr1:151865684(-) A-I      intronic
chr1:151865726(-) A-I      intronic
chr1:151865739(-) A-I      intronic
chr1:151866542(-) A-I      intronic
chr1:151875261(-) A-I      intronic
chr1:151854814(-) A-I      intronic
chr1:151857347(-) A-I      intronic
chr1:151866533(-) A-I      intronic
chr1:151866540(-) A-I      intronic
chr1:151856233(-) A-I      intronic
chr1:151866464(-) A-I      intronic
chr1:151875238(-) A-I      intronic
chr1:151866468(-) A-I      intronic
chr1:151852953(-) A-I      intronic
chr1:151875259(-) A-I      intronic
chr1:151866552(-) A-I      intronic
chr1:151865748(-) A-I      intronic
chr1:151847011(-) A-I      3'UTR
chr1:151865685(-) A-I      intronic
chr1:151866576(-) A-I      intronic
chr1:151846989(-) A-I      3'UTR
chr1:151865693(-) A-I      intronic
chr1:151852948(-) A-I      intronic
chr1:151847097(-) A-I      3'UTR
chr1:151855794(-) A-I      intronic
chr1:151866612(-) A-I      intronic
chr1:151866558(-) A-I      intronic
chr1:151854685(-) A-I      intronic
chr1:151847107(-) A-I      3'UTR
chr1:151854686(-) A-I      intronic
chr1:151852868(-) A-I      intronic
chr1:151865736(-) A-I      intronic
chr1:151861272(-) A-I      intronic
chr1:151865668(-) A-I      intronic
chr1:151866566(-) A-I      intronic
chr1:151865747(-) A-I      intronic
chr1:151852902(-) A-I      intronic
chr1:151875260(-) A-I      intronic
chr1:151847130(-) A-I      3'UTR
chr1:151865676(-) A-I      intronic
chr1:151859725(-) A-I      intronic
chr1:151865590(-) A-I      intronic
chr1:151860180(-) A-I      intronic
chr1:151865682(-) A-I      intronic
chr1:151865631(-) A-I      intronic
chr1:151865791(-) A-I      intronic
chr1:151864516(-) A-I      intronic
chr1:151854730(-) A-I      intronic
chr1:151865617(-) A-I      intronic
chr1:151874197(-) A-I      intronic
chr1:151861242(-) A-I      intronic
chr1:151846962(-) A-I      3'UTR
chr1:151860190(-) A-I      intronic
chr1:151865785(-) A-I      intronic
chr1:151864521(-) A-I      intronic
chr1:151865637(-) A-I      intronic
chr1:151866445(-) A-I      intronic
chr1:151866421(-) A-I      intronic
chr1:151852786(-) A-I      intronic
chr1:151865830(-) A-I      intronic
chr1:151846943(-) A-I      3'UTR
chr1:151865665(-) A-I      intronic
chr1:151866428(-) A-I      intronic
chr1:151866508(-) A-I      intronic
chr1:151865568(-) A-I      intronic
chr1:151847110(-) A-I      3'UTR
chr1:151865588(-) A-I      intronic
chr1:151866634(-) A-I      intronic
chr1:151856504(-) A-I      intronic
chr1:151868703(-) A-I      intronic
chr1:151852383(-) A-I      intronic
chr1:151865630(-) A-I      intronic
chr1:151854689(-) A-I      intronic
chr1:151874237(-) A-I      intronic
chr1:151865635(-) A-I      intronic
chr1:151866557(-) A-I      intronic
chr1:151874207(-) A-I      intronic
chr1:151847069(-) A-I      3'UTR
chr1:151866473(-) A-I      intronic
chr1:151864514(-) A-I      intronic
chr1:151865834(-) A-I      intronic
chr1:151866447(-) A-I      intronic
chr1:151865753(-) A-I      intronic
chr1:151846966(-) A-I      3'UTR
chr1:151860196(-) A-I      intronic
chr1:151852709(-) A-I      intronic
chr1:151860174(-) A-I      intronic
chr1:151866512(-) A-I      intronic
chr1:151866451(-) A-I      intronic
chr1:151865814(-) A-I      intronic
chr1:151861258(-) A-I      intronic
chr1:151865602(-) A-I      intronic
chr1:151852603(-) A-I      intronic
chr1:151866444(-) A-I      intronic
chr1:151852710(-) A-I      intronic
chr1:151859733(-) A-I      intronic
chr1:151865626(-) A-I      intronic
chr1:151853743(-) A-I      intronic
chr1:151866408(-) A-I      intronic
chr1:151852871(-) A-I      intronic
chr1:151865603(-) A-I      intronic
chr1:151862455(-) A-I      intronic
chr1:151846948(-) A-I      3'UTR
chr1:151846936(-) A-I      3'UTR
chr1:151860231(-) A-I      intronic
chr1:151846873(-) A-I      3'UTR
chr1:151846979(-) A-I      3'UTR
chr1:151852842(-) A-I      intronic
chr1:151864503(-) A-I      intronic
chr1:151846975(-) A-I      3'UTR
chr1:151846947(-) A-I      3'UTR
chr1:151866474(-) A-I      intronic
chr1:151847044(-) A-I      3'UTR
chr1:151852703(-) A-I      intronic
chr1:151866614(-) A-I      intronic
chr1:151847070(-) A-I      3'UTR
chr1:151866532(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED THEM4
chr1:151866444(-) A-I intron -    21960545
chr1:151866447(-) A-I intron -    21960545
chr1:151843566(-) A-G exon 3'UTR    22484847
chr1:151843571(-) A-G exon 3'UTR    22484847
chr1:151843629(-) A-G exon 3'UTR    22484847
chr1:151843635(-) A-G exon 3'UTR    22484847
chr1:151843692(-) A-G exon 3'UTR    22484847
chr1:151843725(-) A-G exon 3'UTR    22484847
chr1:151846936(-) A-G exon 3'UTR    22484847
chr1:151846943(-) A-G exon 3'UTR    22484847
chr1:151846947(-) A-G exon 3'UTR    22484847
chr1:151846948(-) A-G exon 3'UTR    22484847
chr1:151846962(-) A-G exon 3'UTR    22484847
chr1:151846966(-) A-G exon 3'UTR    22484847
chr1:151846979(-) A-G exon 3'UTR    22484847
chr1:151847110(-) A-G exon 3'UTR    22484847
chr1:151861242(-) A-G intron -    22484847
chr1:151865637(-) A-G intron -    22484847
chr1:151866634(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase THEM4
chr1:151846139-151846140(-) m6A 3'UTR       24981863//27773535//22608085
chr1:151846153-151846154(-) m6A 3'UTR       24981863//27773535//22608085
chr1:151846407-151846408(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr1:151846417-151846418(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr1:151846431-151846432(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr1:151846548-151846549(-) m6A 3'UTR       27773535//22608085
chr1:151846641-151846642(-) m6A 3'UTR       24981863//27773535//22608085
chr1:151846712-151846713(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr1:151846744-151846745(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr1:151846762-151846763(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr1:151846776-151846777(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr1:151846800-151846801(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr1:151846840-151846841(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr1:151846853-151846854(-) m6A 3'UTR//exon       24981863//27773535
chr1:151846857-151846858(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr1:151846861-151846862(-) m6A 3'UTR//exon       24981863//27773535
chr1:151846865-151846866(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr1:151846876-151846877(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr1:151846882-151846883(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr1:151846946-151846947(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr1:151847043-151847044(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr1:151847239-151847240(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr1:151847348-151847349(-) m6A 3'UTR//exon       24284625//24981863
chr1:151862478-151862479(-) m6A 3'UTR//exon//intron       27773535
chr1:151867345-151867346(-) m6A 3'UTR//intron       27773535
chr1:151867427-151867428(-) m6A 3'UTR//intron       27773535//22608085
chr1:151867476-151867477(-) m6A CDS//intron       27773535//22608085
chr1:151867495-151867496(-) m6A CDS       27773535
chr1:151867503-151867504(-) m6A CDS       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate THEM4
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hsv1-miR-H4-5p
Topotecan       60700

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H4-5p
Interactor2: THEM4

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

Starting a new search, please wait ...