Basic Information:

  VIRBase ID:  

VHID00088601

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-5p:  MIMAT0008401          ATOH8:  NM_032827     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H4-5p	ATOH8
miRBase Accession/Entrez ID	MIMAT0008401	84913
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	bHLHa21//HATH6

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ATOH8	chr2:86014727(+) A-I      3'UTR chr2:86014733(+) A-I      3'UTR chr2:86014731(+) A-I      3'UTR chr2:86010597(+) A-I      intronic chr2:86010438(+) A-I      intronic chr2:86010437(+) A-I      intronic chr2:86009893(+) A-I      intronic chr2:86009888(+) A-I      intronic chr2:86008616(+) A-I      intronic chr2:86011522(+) A-I      intronic chr2:86010429(+) A-I      intronic chr2:86009985(+) A-I      intronic chr2:86008854(+) A-I      intronic chr2:86008638(+) A-I      intronic chr2:86008624(+) A-I      intronic chr2:86008623(+) A-I      intronic chr2:86008514(+) A-I      intronic chr2:86008488(+) A-I      intronic chr2:86009980(+) A-I      intronic chr2:86011544(+) A-I      intronic chr2:86009948(+) A-I      intronic chr2:86008744(+) A-I      intronic chr2:86009921(+) A-I      intronic chr2:86010435(+) A-I      intronic chr2:86009936(+) A-I      intronic chr2:86010019(+) A-I      intronic chr2:86010486(+) A-I      intronic chr2:86008628(+) A-I      intronic chr2:86010002(+) A-I      intronic chr2:86008921(+) A-I      intronic chr2:86009999(+) A-I      intronic chr2:86011479(+) A-I      intronic chr2:86010040(+) A-I      intronic chr2:86009919(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ATOH8	chr2:85981023-85981024(+) m6A 5'UTR//intron       25456834 chr2:85981040-85981041(+) m6A 5'UTR//intron       25456834 chr2:85981051-85981052(+) m6A 5'UTR//intron       25456834 chr2:85981142-85981143(+) m6A 5'UTR//intron       25456834//24981863 chr2:85981243-85981244(+) m6A 5'UTR//intron       25456834//24981863 chr2:85981351-85981352(+) m6A CDS//intron       24284625//24981863//22575960 chr2:85981435-85981436(+) m6A CDS//intron       24284625//25456834//24981863//22575960 chr2:85981448-85981449(+) m6A CDS//intron       24284625//25456834//24981863//22575960 chr2:85981496-85981497(+) m6A CDS//intron       25456834//24981863 chr2:85981501-85981502(+) m6A CDS//intron       25456834//24981863 chr2:85981583-85981584(+) m6A CDS//intron       25456834//24981863 chr2:85981671-85981672(+) m6A CDS//intron       - chr2:86000220-86000221(+) m6A exon//intron       25456834 chr2:86000241-86000242(+) m6A exon//intron       25456834 chr2:86000272-86000273(+) m6A exon//intron       25456834 chr2:86000277-86000278(+) m6A exon//intron       25456834 chr2:86000290-86000291(+) m6A exon//intron       25456834 chr2:86000336-86000337(+) m6A exon//intron       - chr2:86000411-86000412(+) m6A exon//intron       - chr2:86000596-86000597(+) m6A exon//intron       24209618 chr2:86014270-86014271(+) m6A 3'UTR//exon       24981863 chr2:86014318-86014319(+) m6A 3'UTR//exon       24981863 chr2:86014324-86014325(+) m6A 3'UTR//exon       24981863 chr2:86014349-86014350(+) m6A 3'UTR//exon       24981863 chr2:86014449-86014450(+) m6A 3'UTR//exon       25456834//24981863 chr2:86014549-86014550(+) m6A 3'UTR//exon       - chr2:86014765-86014766(+) m6A 3'UTR//exon       - chr2:86014885-86014886(+) m6A 3'UTR//exon       - chr2:86015037-86015038(+) m6A 3'UTR//exon       24981863 chr2:86015045-86015046(+) m6A 3'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ATOH8	Exosome Blood     - Nucleus HeLa-S3 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hsv1-miR-H4-5p	Topotecan       60700

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H4-5p
Interactor2: ATOH8

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg