Basic Information:

  VIRBase ID:  

VHID00088543

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-5p:  MIMAT0008401          SESN2:  NM_031459     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H4-5p	SESN2
miRBase Accession/Entrez ID	MIMAT0008401	83667
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HI95//SES2//SEST2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SESN2	chr1:28589341(+) A-I      intronic chr1:28589260(+) A-I      intronic chr1:28597396(+) A-I      intronic chr1:28589261(+) A-I      intronic chr1:28589262(+) A-I      intronic chr1:28589289(+) A-I      intronic chr1:28589384(+) A-I      intronic chr1:28589380(+) A-I      intronic chr1:28589292(+) A-I      intronic chr1:28589371(+) A-I      intronic chr1:28597415(+) A-I      intronic chr1:28588392(+) A-I      intronic chr1:28589359(+) A-I      intronic chr1:28589351(+) A-I      intronic chr1:28589348(+) A-I      intronic chr1:28592070(+) A-I      intronic chr1:28592034(+) A-I      intronic chr1:28591991(+) A-I      intronic chr1:28591974(+) A-I      intronic chr1:28591961(+) A-I      intronic chr1:28589360(+) A-I      intronic chr1:28588526(+) A-I      intronic chr1:28592135(+) A-I      intronic chr1:28593174(+) A-I      intronic chr1:28592320(+) A-I      intronic chr1:28592182(+) A-I      intronic chr1:28597260(+) A-I      intronic chr1:28602840(+) A-I      intronic chr1:28597438(+) A-I      intronic chr1:28597437(+) A-I      intronic chr1:28597280(+) A-I      intronic chr1:28596803(+) A-I      intronic chr1:28596719(+) A-I      intronic chr1:28595056(+) A-I      intronic chr1:28594781(+) A-I      intronic chr1:28593210(+) A-I      intronic chr1:28593188(+) A-I      intronic chr1:28602228(+) A-I      intronic chr1:28602270(+) A-I      intronic chr1:28597421(+) A-I      intronic chr1:28597424(+) A-I      intronic chr1:28588986(+) A-I      intronic chr1:28597511(+) A-I      intronic chr1:28597176(+) A-I      intronic chr1:28588566(+) A-I      intronic chr1:28606662(+) A-I      intronic chr1:28595156(+) A-I      intronic chr1:28602098(+) A-I      intronic chr1:28596696(+) A-I      intronic chr1:28597354(+) A-I      intronic chr1:28603910(+) A-I      intronic chr1:28592264(+) A-I      intronic chr1:28594957(+) A-I      intronic chr1:28590707(+) A-I      intronic chr1:28597102(+) A-I      intronic chr1:28588991(+) A-I      intronic chr1:28588458(+) A-I      intronic chr1:28592168(+) A-I      intronic chr1:28592189(+) A-I      intronic chr1:28594804(+) A-I      intronic chr1:28588391(+) A-I      intronic chr1:28602250(+) A-I      intronic chr1:28589185(+) A-I      intronic chr1:28597139(+) A-I      intronic chr1:28589276(+) A-I      intronic chr1:28593304(+) A-I      intronic chr1:28590504(+) A-I      intronic chr1:28597183(+) A-I      intronic chr1:28603927(+) A-I      intronic chr1:28592302(+) A-I      intronic chr1:28590719(+) A-I      intronic chr1:28593151(+) A-I      intronic chr1:28590683(+) A-I      intronic chr1:28595015(+) A-I      intronic chr1:28588982(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SESN2	chr1:28588391(+) A-G intron -    22484847 chr1:28588458(+) A-G intron -    22484847 chr1:28588566(+) A-G intron -    22484847 chr1:28588991(+) A-G intron -    22484847 chr1:28590504(+) A-G intron -    22484847 chr1:28592264(+) A-G intron -    22484847 chr1:28592302(+) A-G intron -    22484847 chr1:28596696(+) A-G intron -    22484847 chr1:28597102(+) A-G intron -    22484847 chr1:28597139(+) A-G intron -    22484847 chr1:28597176(+) A-G intron -    22484847 chr1:28597183(+) A-G intron -    22484847 chr1:28597424(+) A-G intron -    22484847 chr1:28602040(+) C-G intron -    22484847 chr1:28602374(+) G-T intron -    22484847 chr1:28602377(+) C-G intron -    22484847 chr1:28602378(+) A-C intron -    22484847 chr1:28603910(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SESN2	chr1:28586093-28586094(+) m6A 5'UTR       24284625//25456834//27773536 chr1:28586111-28586112(+) m6A 5'UTR       24284625//25456834//27773536 chr1:28586303-28586304(+) m6A 5'UTR       27773536 chr1:28586371-28586372(+) m6A CDS       24209618//27773536 chr1:28586398-28586399(+) m6A CDS       24284625//24209618//27773536 chr1:28598257-28598258(+) m6A CDS       24284625 chr1:28600580-28600581(+) m6A CDS       - chr1:28600601-28600602(+) m6A CDS       - chr1:28607236-28607237(+) m6A CDS       24284625 chr1:28607325-28607326(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr1:28607354-28607355(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr1:28607370-28607371(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:28607380-28607381(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:28607479-28607480(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:28607522-28607523(+) Gm 3'UTR       - chr1:28607553-28607554(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:28607656-28607657(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:28607707-28607708(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:28608462-28608463(+) m6A 3'UTR       - chr1:28608504-28608505(+) m6A 3'UTR       24284625 chr1:28608585-28608586(+) m6A 3'UTR       24284625//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SESN2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hsv1-miR-H4-5p	Topotecan       60700

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H4-5p
Interactor2: SESN2

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid
Support Database	VmiReg