Basic Information:

  VIRBase ID:  

VHID00088486

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-5p:  MIMAT0008401          TRIM46:  NR_104150     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H4-5p	TRIM46
miRBase Accession/Entrez ID	MIMAT0008401	80128
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GENEY//TRIFIC

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TRIM46	chr1:155155170(+) A-I      3'UTR chr1:155155168(+) A-I      3'UTR chr1:155155165(+) A-I      3'UTR chr1:155155121(+) A-I      3'UTR chr1:155155646(+) A-I      intronic chr1:155155571(+) A-I      intronic chr1:155155593(+) A-I      intronic chr1:155155552(+) A-I      intronic chr1:155155553(+) A-I      intronic chr1:155155133(+) A-I      3'UTR chr1:155155523(+) A-I      intronic chr1:155155568(+) A-I      intronic chr1:155155526(+) A-I      intronic chr1:155152741(+) A-I      intronic chr1:155155308(+) A-I      3'UTR chr1:155155172(+) A-I      3'UTR chr1:155155061(+) A-I      3'UTR chr1:155155130(+) A-I      3'UTR chr1:155155647(+) A-I      intronic chr1:155155146(+) A-I      3'UTR chr1:155155660(+) A-I      intronic chr1:155155408(+) A-I      intronic chr1:155155332(+) A-I      3'UTR chr1:155155451(+) A-I      intronic chr1:155149498(+) A-I      NonSyn:Thr->Ala chr1:155155633(+) A-I      intronic chr1:155155199(+) A-I      3'UTR chr1:155155067(+) A-I      3'UTR chr1:155155208(+) A-I      3'UTR chr1:155155303(+) A-I      3'UTR chr1:155155269(+) A-I      3'UTR chr1:155155088(+) A-I      3'UTR chr1:155155185(+) A-I      3'UTR chr1:155155062(+) A-I      3'UTR chr1:155155131(+) A-I      3'UTR chr1:155155307(+) A-I      3'UTR chr1:155155407(+) A-I      intronic chr1:155155309(+) A-I      3'UTR chr1:155155198(+) A-I      3'UTR chr1:155155092(+) A-I      3'UTR chr1:155155310(+) A-I      3'UTR chr1:155155053(+) A-I      3'UTR chr1:155155467(+) A-I      intronic chr1:155155247(+) A-I      3'UTR chr1:155155437(+) A-I      intronic chr1:155154291(+) A-I      intronic chr1:155155102(+) A-I      3'UTR chr1:155155516(+) A-I      intronic chr1:155155648(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TRIM46	chr1:155149498(+) A-I exon CDS    19478186

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TRIM46	chr1:155156472-155156473(+) m6A CDS//exon       24209618//25456834 chr1:155156541-155156542(+) m6A CDS//exon       25456834 chr1:155156661-155156662(+) m6A CDS//exon       25456834 chr1:155156688-155156689(+) m6A 3'UTR//exon       25456834 chr1:155156719-155156720(+) m6A 3'UTR//exon       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TRIM46	Exosome Blood     - Nucleolus K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hsv1-miR-H4-5p	Topotecan       60700

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H4-5p
Interactor2: TRIM46

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg