Basic Information:

  VIRBase ID:  

VHID00088366

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-5p:  MIMAT0008401          ATL2:  NM_001330462     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H4-5p	ATL2
miRBase Accession/Entrez ID	MIMAT0008401	64225
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	aip-2//ARL3IP2//ARL6IP2//atlastin2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ATL2	chr2:38561287(-) A-I      intronic chr2:38561336(-) A-I      intronic chr2:38531237(-) A-I      intronic chr2:38561283(-) A-I      intronic chr2:38528403(-) A-I      intronic chr2:38559446(-) A-I      intronic chr2:38534480(-) A-I      intronic chr2:38582979(-) A-I      intronic chr2:38583030(-) A-I      intronic chr2:38561248(-) A-I      intronic chr2:38528285(-) A-I      intronic chr2:38559477(-) A-I      intronic chr2:38583039(-) A-I      intronic chr2:38587556(-) A-I      intronic chr2:38582970(-) A-I      intronic chr2:38582966(-) A-I      intronic chr2:38561376(-) A-I      intronic chr2:38561351(-) A-I      intronic chr2:38528148(-) A-I      intronic chr2:38548983(-) A-I      intronic chr2:38549899(-) A-I      intronic chr2:38549938(-) A-I      intronic chr2:38550017(-) A-I      intronic chr2:38558267(-) A-I      intronic chr2:38559425(-) A-I      intronic chr2:38559441(-) A-I      intronic chr2:38559473(-) A-I      intronic chr2:38559481(-) A-I      intronic chr2:38559487(-) A-I      intronic chr2:38559508(-) A-I      intronic chr2:38561234(-) A-I      intronic chr2:38561237(-) A-I      intronic chr2:38561269(-) A-I      intronic chr2:38561293(-) A-I      intronic chr2:38561349(-) A-I      intronic chr2:38561417(-) A-I      intronic chr2:38561444(-) A-I      intronic chr2:38561453(-) A-I      intronic chr2:38561728(-) A-I      intronic chr2:38561754(-) A-I      intronic chr2:38561837(-) A-I      intronic chr2:38566220(-) A-I      intronic chr2:38566970(-) A-I      intronic chr2:38567006(-) A-I      intronic chr2:38567049(-) A-I      intronic chr2:38567060(-) A-I      intronic chr2:38568613(-) A-I      intronic chr2:38586490(-) A-I      intronic chr2:38568658(-) A-I      intronic chr2:38570166(-) A-I      intronic chr2:38570207(-) A-I      intronic chr2:38570268(-) A-I      intronic chr2:38574969(-) A-I      intronic chr2:38574985(-) A-I      intronic chr2:38575397(-) A-I      intronic chr2:38575521(-) A-I      intronic chr2:38575522(-) A-I      intronic chr2:38578732(-) A-I      intronic chr2:38578811(-) A-I      intronic chr2:38578862(-) A-I      intronic chr2:38578930(-) A-I      intronic chr2:38579114(-) A-I      intronic chr2:38579142(-) A-I      intronic chr2:38579167(-) A-I      intronic chr2:38579168(-) A-I      intronic chr2:38579171(-) A-I      intronic chr2:38579172(-) A-I      intronic chr2:38581212(-) A-I      intronic chr2:38581766(-) A-I      intronic chr2:38581787(-) A-I      intronic chr2:38581789(-) A-I      intronic chr2:38581892(-) A-I      intronic chr2:38581910(-) A-I      intronic chr2:38581913(-) A-I      intronic chr2:38581919(-) A-I      intronic chr2:38582397(-) A-I      intronic chr2:38582406(-) A-I      intronic chr2:38582445(-) A-I      intronic chr2:38582446(-) A-I      intronic chr2:38582467(-) A-I      intronic chr2:38582974(-) A-I      intronic chr2:38583106(-) A-I      intronic chr2:38583111(-) A-I      intronic chr2:38583112(-) A-I      intronic chr2:38583120(-) A-I      intronic chr2:38586504(-) A-I      intronic chr2:38586512(-) A-I      intronic chr2:38586558(-) A-I      intronic chr2:38587512(-) A-I      intronic chr2:38587670(-) A-I      intronic chr2:38594564(-) A-I      intronic chr2:38594578(-) A-I      intronic chr2:38594580(-) A-I      intronic chr2:38594581(-) A-I      intronic chr2:38594635(-) A-I      intronic chr2:38594931(-) A-I      intronic chr2:38527881(-) A-I      intronic chr2:38527901(-) A-I      intronic chr2:38527904(-) A-I      intronic chr2:38527931(-) A-I      intronic chr2:38528140(-) A-I      intronic chr2:38528305(-) A-I      intronic chr2:38528315(-) A-I      intronic chr2:38528325(-) A-I      intronic chr2:38528336(-) A-I      intronic chr2:38528349(-) A-I      intronic chr2:38528361(-) A-I      intronic chr2:38528362(-) A-I      intronic chr2:38528384(-) A-I      intronic chr2:38528407(-) A-I      intronic chr2:38530408(-) A-I      intronic chr2:38530433(-) A-I      intronic chr2:38530525(-) A-I      intronic chr2:38530528(-) A-I      intronic chr2:38530551(-) A-I      intronic chr2:38531107(-) A-I      intronic chr2:38532591(-) A-I      intronic chr2:38532608(-) A-I      intronic chr2:38532615(-) A-I      intronic chr2:38532634(-) A-I      intronic chr2:38532645(-) A-I      intronic chr2:38532653(-) A-I      intronic chr2:38534255(-) A-I      intronic chr2:38595182(-) A-I      intronic chr2:38595281(-) A-I      intronic chr2:38595527(-) A-I      intronic chr2:38595532(-) A-I      intronic chr2:38595533(-) A-I      intronic chr2:38596661(-) A-I      intronic chr2:38596662(-) A-I      intronic chr2:38597669(-) A-I      intronic chr2:38599003(-) A-I      intronic chr2:38534328(-) A-I      intronic chr2:38534502(-) A-I      intronic chr2:38534503(-) A-I      intronic chr2:38534504(-) A-I      intronic chr2:38548095(-) A-I      intronic chr2:38548866(-) A-I      intronic chr2:38548976(-) A-I      intronic chr2:38534337(-) A-I      intronic chr2:38531017(-) A-I      intronic chr2:38596700(-) A-I      intronic chr2:38566301(-) A-I      intronic chr2:38530459(-) A-I      intronic chr2:38575091(-) A-I      intronic chr2:38561339(-) A-I      intronic chr2:38561300(-) A-I      intronic chr2:38550618(-) A-I      intronic chr2:38559547(-) A-I      intronic chr2:38528250(-) A-I      intronic chr2:38595241(-) A-I      intronic chr2:38561350(-) A-I      intronic chr2:38531030(-) A-I      intronic chr2:38575404(-) A-I      intronic chr2:38561587(-) A-I      intronic chr2:38534500(-) A-I      intronic chr2:38559386(-) A-I      intronic chr2:38558259(-) A-I      intronic chr2:38561354(-) A-I      intronic chr2:38575569(-) A-I      intronic chr2:38570240(-) A-I      intronic chr2:38562993(-) A-I      intronic chr2:38570168(-) A-I      intronic chr2:38562949(-) A-I      intronic chr2:38587209(-) A-I      intronic chr2:38587164(-) A-I      intronic chr2:38587692(-) A-I      intronic chr2:38594626(-) A-I      intronic chr2:38566195(-) A-I      intronic chr2:38548966(-) A-I      intronic chr2:38531149(-) A-I      intronic chr2:38534530(-) A-I      intronic chr2:38581993(-) A-I      intronic chr2:38528280(-) A-I      intronic chr2:38586557(-) A-I      intronic chr2:38587189(-) A-I      intronic chr2:38587019(-) A-I      intronic chr2:38575006(-) A-I      intronic chr2:38582980(-) A-I      intronic chr2:38561718(-) A-I      intronic chr2:38575405(-) A-I      intronic chr2:38561801(-) A-I      intronic chr2:38542347(-) A-I      intronic chr2:38561740(-) A-I      intronic chr2:38531110(-) A-I      intronic chr2:38595174(-) A-I      intronic chr2:38575484(-) A-I      intronic chr2:38531162(-) A-I      intronic chr2:38542349(-) A-I      intronic chr2:38557123(-) A-I      intronic chr2:38587592(-) A-I      intronic chr2:38596631(-) A-I      intronic chr2:38550637(-) A-I      intronic chr2:38534638(-) A-I      intronic chr2:38595348(-) A-I      intronic chr2:38594235(-) A-I      intronic chr2:38534495(-) A-I      intronic chr2:38547192(-) A-I      intronic chr2:38527866(-) A-I      intronic chr2:38596579(-) A-I      intronic chr2:38529479(-) A-I      intronic chr2:38583519(-) A-I      intronic chr2:38534522(-) A-I      intronic chr2:38530564(-) A-I      intronic chr2:38594636(-) A-I      intronic chr2:38534378(-) A-I      intronic chr2:38546679(-) A-I      intronic chr2:38528290(-) A-I      intronic chr2:38587087(-) A-I      intronic chr2:38581951(-) A-I      intronic chr2:38582488(-) A-I      intronic chr2:38583607(-) A-I      intronic chr2:38587160(-) A-I      intronic chr2:38559598(-) A-I      intronic chr2:38559465(-) A-I      intronic chr2:38587697(-) A-I      intronic chr2:38582447(-) A-I      intronic chr2:38566353(-) A-I      intronic chr2:38531188(-) A-I      intronic chr2:38596427(-) A-I      intronic chr2:38532622(-) A-I      intronic chr2:38567083(-) A-I      intronic chr2:38561280(-) A-I      intronic chr2:38546549(-) A-I      intronic chr2:38567026(-) A-I      intronic chr2:38581950(-) A-I      intronic chr2:38575526(-) A-I      intronic chr2:38532569(-) A-I      intronic chr2:38530486(-) A-I      intronic chr2:38549969(-) A-I      intronic chr2:38570203(-) A-I      intronic chr2:38561310(-) A-I      intronic chr2:38587163(-) A-I      intronic chr2:38561268(-) A-I      intronic chr2:38586368(-) A-I      intronic chr2:38575525(-) A-I      intronic chr2:38555064(-) A-I      intronic chr2:38567114(-) A-I      intronic chr2:38581875(-) A-I      intronic chr2:38595173(-) A-I      intronic chr2:38570174(-) A-I      intronic chr2:38567012(-) A-I      intronic chr2:38559380(-) A-I      intronic chr2:38575087(-) A-I      intronic chr2:38588449(-) A-I      intronic chr2:38559621(-) A-I      intronic chr2:38558194(-) A-I      intronic chr2:38553982(-) A-I      intronic chr2:38558630(-) A-I      intronic chr2:38531029(-) A-I      intronic chr2:38566201(-) A-I      intronic chr2:38561257(-) A-I      intronic chr2:38587500(-) A-I      intronic chr2:38581788(-) A-I      intronic chr2:38566868(-) A-I      intronic chr2:38548188(-) A-I      intronic chr2:38581985(-) A-I      intronic chr2:38561445(-) A-I      intronic chr2:38558434(-) A-I      intronic chr2:38564465(-) A-I      intronic chr2:38561332(-) A-I      intronic chr2:38581920(-) A-I      intronic chr2:38575508(-) A-I      intronic chr2:38560431(-) A-I      intronic chr2:38548987(-) A-I      intronic chr2:38587552(-) A-I      intronic chr2:38582448(-) A-I      intronic chr2:38578907(-) A-I      intronic chr2:38593077(-) A-I      intronic chr2:38528330(-) A-I      intronic chr2:38578838(-) A-I      intronic chr2:38548214(-) A-I      intronic chr2:38566103(-) A-I      intronic chr2:38587525(-) A-I      intronic chr2:38582462(-) A-I      intronic chr2:38561431(-) A-I      intronic chr2:38534637(-) A-I      intronic chr2:38528385(-) A-I      intronic chr2:38534619(-) A-I      intronic chr2:38582539(-) A-I      intronic chr2:38566122(-) A-I      intronic chr2:38594234(-) A-I      intronic chr2:38567015(-) A-I      intronic chr2:38575102(-) A-I      intronic chr2:38566935(-) A-I      intronic chr2:38566236(-) A-I      intronic chr2:38567001(-) A-I      intronic chr2:38587085(-) A-I      intronic chr2:38596629(-) A-I      intronic chr2:38587196(-) A-I      intronic chr2:38567106(-) A-I      intronic chr2:38550564(-) A-I      intronic chr2:38596065(-) A-I      intronic chr2:38548941(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ATL2	chr2:38534412(-) A-I intron -    21960545 chr2:38534715(-) A-I intron -    21960545 chr2:38550637(-) A-I intron -    21960545 chr2:38534453(-) A-G intron -    22484847 chr2:38534675(-) A-G intron -    22484847 chr2:38528280(-) A-G intron -    22484847 chr2:38530486(-) A-G intron -    22484847 chr2:38530549(-) A-G intron -    22484847 chr2:38532527(-) A-G intron -    22484847 chr2:38534495(-) A-G intron -    22484847 chr2:38534500(-) A-G intron -    22484847 chr2:38534501(-) A-G intron -    22484847 chr2:38534638(-) A-G intron -    22484847 chr2:38548979(-) A-G intron -    22484847 chr2:38548987(-) A-G intron -    22484847 chr2:38548993(-) A-G intron -    22484847 chr2:38556993(-) C-T intron -    22484847 chr2:38558434(-) A-G intron -    22484847 chr2:38561268(-) A-G intron -    22484847 chr2:38561300(-) A-G intron -    22484847 chr2:38561309(-) A-G intron -    22484847 chr2:38561354(-) A-G intron -    22484847 chr2:38561418(-) A-G intron -    22484847 chr2:38561431(-) A-G intron -    22484847 chr2:38561445(-) A-G intron -    22484847 chr2:38561678(-) A-G intron -    22484847 chr2:38561718(-) A-G intron -    22484847 chr2:38561740(-) A-G intron -    22484847 chr2:38561801(-) A-G intron -    22484847 chr2:38566122(-) A-G intron -    22484847 chr2:38566155(-) A-G intron -    22484847 chr2:38566194(-) A-G intron -    22484847 chr2:38566195(-) A-G intron -    22484847 chr2:38566201(-) A-G intron -    22484847 chr2:38566236(-) A-G intron -    22484847 chr2:38566301(-) A-G intron -    22484847 chr2:38566997(-) A-G intron -    22484847 chr2:38567012(-) A-G intron -    22484847 chr2:38567015(-) A-G intron -    22484847 chr2:38567027(-) A-G intron -    22484847 chr2:38567061(-) C-T intron -    22484847 chr2:38567106(-) A-G intron -    22484847 chr2:38570168(-) A-G intron -    22484847 chr2:38570174(-) A-G intron -    22484847 chr2:38570203(-) A-G intron -    22484847 chr2:38570240(-) A-G intron -    22484847 chr2:38575406(-) A-G intron -    22484847 chr2:38575508(-) A-G intron -    22484847 chr2:38575525(-) A-G intron -    22484847 chr2:38575526(-) A-G intron -    22484847 chr2:38575569(-) A-G intron -    22484847 chr2:38578838(-) A-G intron -    22484847 chr2:38579132(-) A-G intron -    22484847 chr2:38579137(-) A-G intron -    22484847 chr2:38581875(-) A-G intron -    22484847 chr2:38581950(-) A-G intron -    22484847 chr2:38581951(-) A-G intron -    22484847 chr2:38581985(-) A-G intron -    22484847 chr2:38581993(-) A-G intron -    22484847 chr2:38582366(-) A-G intron -    22484847 chr2:38582447(-) A-G intron -    22484847 chr2:38582448(-) A-G intron -    22484847 chr2:38582488(-) A-G intron -    22484847 chr2:38587019(-) A-G intron -    22484847 chr2:38587085(-) A-G intron -    22484847 chr2:38587087(-) A-G intron -    22484847 chr2:38587160(-) A-G intron -    22484847 chr2:38587163(-) A-G intron -    22484847 chr2:38587164(-) A-G intron -    22484847 chr2:38587189(-) A-G intron -    22484847 chr2:38587196(-) A-G intron -    22484847 chr2:38587209(-) A-G intron -    22484847 chr2:38587243(-) A-G intron -    22484847 chr2:38587500(-) A-G intron -    22484847 chr2:38587525(-) A-G intron -    22484847 chr2:38587548(-) A-G intron -    22484847 chr2:38587552(-) A-G intron -    22484847 chr2:38587623(-) A-G intron -    22484847 chr2:38594552(-) A-G intron -    22484847 chr2:38594556(-) A-G intron -    22484847 chr2:38594626(-) A-G intron -    22484847 chr2:38594636(-) A-G intron -    22484847 chr2:38595034(-) A-G intron -    22484847 chr2:38595241(-) A-G intron -    22484847 chr2:38595661(-) A-G intron -    22484847 chr2:38596663(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ATL2	chr2:38522208-38522209(-) m6A 3'UTR       - chr2:38522625-38522626(-) m6A 3'UTR       26404942 chr2:38522727-38522728(-) Cm 3'UTR       - chr2:38522932-38522933(-) m6A 3'UTR       24284625//24981863//22608085 chr2:38522944-38522945(-) m6A 3'UTR       24284625//24981863//22608085 chr2:38523059-38523060(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr2:38523075-38523076(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr2:38523116-38523117(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr2:38523143-38523144(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr2:38523196-38523197(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr2:38523217-38523218(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr2:38523557-38523558(-) m6A 3'UTR//intron       26404942//22608085 chr2:38523569-38523570(-) m6A 3'UTR//intron       26404942//22608085 chr2:38523623-38523624(-) m6A 3'UTR//intron       24981863//26404942//22608085 chr2:38523657-38523658(-) m6A CDS//intron       24981863//26404942//22608085 chr2:38523720-38523721(-) m6A CDS//intron       24981863//26404942 chr2:38525288-38525289(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085 chr2:38525299-38525300(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr2:38525323-38525324(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr2:38525359-38525360(-) Y 3'UTR//CDS//exon       26075521 chr2:38525424-38525425(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr2:38525447-38525448(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085 chr2:38525554-38525555(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085 chr2:38525580-38525581(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085 chr2:38525636-38525637(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863 chr2:38525666-38525667(-) m6A 3'UTR//CDS//exon       24209618 chr2:38570601-38570602(-) m6A 3'UTR//CDS//exon//intron       24284625 chr2:38603722-38603723(-) m6A 5'UTR//intron       24209618//24981863 chr2:38604335-38604336(-) m6A 5'UTR//CDS//exon       24209618//25456834//24981863//26404942//27371828//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ATL2	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hsv1-miR-H4-5p	Topotecan       60700

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H4-5p
Interactor2: ATL2

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg