Basic Information:

  VIRBase ID:  

VHID00088212

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-5p:  MIMAT0008401          LRIF1:  NM_018372     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H4-5p	LRIF1
miRBase Accession/Entrez ID	MIMAT0008401	55791
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C1orf103//HBiX1//RIF1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LRIF1	chr1:111500085(-) A-I      intronic chr1:111496995(-) A-I      intronic chr1:111492166(-) A-I      intronic chr1:111492299(-) A-I      intronic chr1:111497102(-) A-I      intronic chr1:111497006(-) A-I      intronic chr1:111497031(-) A-I      intronic chr1:111500041(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	LRIF1	chr1:111497006(-) A-G intron -    22484847 chr1:111500041(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LRIF1	chr1:111490565-111490566(-) m6A 3'UTR       24981863//27773535//22608085 chr1:111490649-111490650(-) m6A CDS       24284625//24981863//28052920//26404942//27773535//22608085 chr1:111490675-111490676(-) m6A CDS       24284625//24981863//28052920//26404942//27773535//22608085 chr1:111490745-111490746(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//22608085 chr1:111490813-111490814(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//22608085 chr1:111490826-111490827(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//22608085 chr1:111490831-111490832(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//22608085 chr1:111490954-111490955(-) m6A CDS       24284625//24981863//28052920//27773535//22608085 chr1:111490990-111490991(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//22608085 chr1:111492475-111492476(-) m6A CDS       24981863//28052920//27773535//27371828//22608085 chr1:111492507-111492508(-) m6A CDS       24981863//28052920//27773535//27371828//22608085 chr1:111493915-111493916(-) m6A CDS//intron       27773535 chr1:111493922-111493923(-) m6A CDS//intron       27773535//22608085 chr1:111494050-111494051(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:111494094-111494095(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:111494104-111494105(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:111494126-111494127(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:111494158-111494159(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:111494229-111494230(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:111494313-111494314(-) m6A CDS//intron       24284625//25456834//24981863//27773535//22608085 chr1:111494324-111494325(-) m6A CDS//intron       24284625//25456834//24981863//27773535//22608085 chr1:111494391-111494392(-) m6A CDS//intron       24284625//25456834//24981863//27773535//22608085 chr1:111494547-111494548(-) m6A CDS//intron       24981863//27773535//22608085 chr1:111494679-111494680(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:111494749-111494750(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:111494762-111494763(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:111494771-111494772(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:111495029-111495030(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:111495060-111495061(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:111495073-111495074(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:111495132-111495133(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:111495174-111495175(-) m6A 5'UTR//CDS//intron       24981863//22608085 chr1:111495191-111495192(-) m6A 5'UTR//CDS//intron       24981863//22608085 chr1:111495261-111495262(-) m6A 5'UTR//CDS//intron       24981863//27773535//22608085 chr1:111495283-111495284(-) m6A 5'UTR//CDS//intron       24981863//27773535 chr1:111506366-111506367(-) m6A 5'UTR       24284625//27773535 chr1:111506435-111506436(-) m6A 5'UTR       24284625//24981863//27773535 chr1:111506582-111506583(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LRIF1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hsv1-miR-H4-5p	Topotecan       60700

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H4-5p
Interactor2: LRIF1

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg