Basic Information:

  VIRBase ID:  

VHID00088105

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-5p:  MIMAT0008401          TMED9:  NM_017510     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H4-5p	TMED9
miRBase Accession/Entrez ID	MIMAT0008401	54732
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GMP25//HSGP25L2G//p24a2//p24alpha2//p25

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMED9	chr5:177019260-177019261(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr5:177019284-177019285(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr5:177019335-177019336(+) Cm CDS//exon       - chr5:177019356-177019357(+) m1A CDS//exon       26863196//26863410 chr5:177019386-177019387(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960 chr5:177019465-177019466(+) m6A exon//intron       24284625//24981863 chr5:177019523-177019524(+) m6A exon//intron       24981863 chr5:177019578-177019579(+) m6A CDS//exon       24981863//22575960 chr5:177019662-177019663(+) m6A CDS//exon       24284625//24981863//26404942//22575960 chr5:177019671-177019672(+) m6A CDS//exon       24284625//24981863//26404942//22575960 chr5:177020247-177020248(+) m6A exon//intron       24284625//24981863 chr5:177020795-177020796(+) m6A exon//intron       27773535 chr5:177021152-177021153(+) m6A CDS//exon       26404942 chr5:177021168-177021169(+) m6A CDS//exon       26404942//22575960 chr5:177021203-177021204(+) m6A CDS//exon       26404942//22575960 chr5:177021246-177021247(+) m6A CDS//exon       24284625//26404942//22575960 chr5:177021256-177021257(+) Cm CDS//exon       - chr5:177021275-177021276(+) m6A CDS//exon       24284625//26404942//22575960 chr5:177022291-177022292(+) m6A CDS//exon       24284625//22575960 chr5:177022339-177022340(+) m6A CDS//exon       24284625//22575960 chr5:177022463-177022464(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085 chr5:177022473-177022474(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085 chr5:177022495-177022496(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085 chr5:177022985-177022986(+) m6A 3'UTR       27773535 chr5:177022991-177022992(+) m6A 3'UTR       27773535 chr5:177022996-177022997(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMED9	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hsv1-miR-H4-5p	Topotecan       60700

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H4-5p
Interactor2: TMED9

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg