Detail Information

Basic Information:


  VIRBase ID:  

VHID00087655

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-5p:           TOMM20:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H4-5p TOMM20
miRBase
Accession/Entrez ID		 MIMAT0008401 9804
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - MAS20//MOM19//TOM20

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TOMM20
chr1:235286567(-) A-I      intronic
chr1:235277917(-) A-I      intronic
chr1:235287417(-) A-I      intronic
chr1:235278860(-) A-I      intronic
chr1:235286756(-) A-I      intronic
chr1:235287474(-) A-I      intronic
chr1:235287522(-) A-I      intronic
chr1:235288736(-) A-I      intronic
chr1:235289661(-) A-I      intronic
chr1:235280283(-) A-I      intronic
chr1:235289664(-) A-I      intronic
chr1:235289955(-) A-I      intronic
chr1:235289983(-) A-I      intronic
chr1:235289996(-) A-I      intronic
chr1:235290018(-) A-I      intronic
chr1:235278329(-) A-I      intronic
chr1:235278331(-) A-I      intronic
chr1:235278395(-) A-I      intronic
chr1:235278429(-) A-I      intronic
chr1:235278820(-) A-I      intronic
chr1:235278855(-) A-I      intronic
chr1:235278856(-) A-I      intronic
chr1:235278879(-) A-I      intronic
chr1:235278938(-) A-I      intronic
chr1:235278940(-) A-I      intronic
chr1:235279545(-) A-I      intronic
chr1:235279553(-) A-I      intronic
chr1:235279612(-) A-I      intronic
chr1:235279621(-) A-I      intronic
chr1:235279630(-) A-I      intronic
chr1:235279974(-) A-I      intronic
chr1:235281965(-) A-I      intronic
chr1:235281999(-) A-I      intronic
chr1:235282039(-) A-I      intronic
chr1:235282094(-) A-I      intronic
chr1:235284163(-) A-I      intronic
chr1:235284171(-) A-I      intronic
chr1:235284432(-) A-I      intronic
chr1:235284438(-) A-I      intronic
chr1:235284452(-) A-I      intronic
chr1:235284499(-) A-I      intronic
chr1:235286620(-) A-I      intronic
chr1:235286688(-) A-I      intronic
chr1:235286700(-) A-I      intronic
chr1:235288527(-) A-I      intronic
chr1:235289172(-) A-I      intronic
chr1:235289184(-) A-I      intronic
chr1:235289209(-) A-I      intronic
chr1:235289266(-) A-I      intronic
chr1:235289276(-) A-I      intronic
chr1:235289277(-) A-I      intronic
chr1:235289322(-) A-I      intronic
chr1:235289618(-) A-I      intronic
chr1:235289625(-) A-I      intronic
chr1:235289627(-) A-I      intronic
chr1:235277891(-) A-I      intronic
chr1:235278779(-) A-I      intronic
chr1:235283852(-) A-I      intronic
chr1:235278313(-) A-I      intronic
chr1:235278700(-) A-I      intronic
chr1:235284349(-) A-I      intronic
chr1:235282040(-) A-I      intronic
chr1:235278232(-) A-I      intronic
chr1:235289344(-) A-I      intronic
chr1:235278759(-) A-I      intronic
chr1:235278818(-) A-I      intronic
chr1:235290033(-) A-I      intronic
chr1:235283859(-) A-I      intronic
chr1:235287540(-) A-I      intronic
chr1:235291426(-) A-I      intronic
chr1:235278464(-) A-I      intronic
chr1:235278456(-) A-I      intronic
chr1:235278830(-) A-I      intronic
chr1:235278399(-) A-I      intronic
chr1:235275712(-) A-I      intronic
chr1:235288608(-) A-I      intronic
chr1:235289586(-) A-I      intronic
chr1:235281956(-) A-I      intronic
chr1:235279905(-) A-I      intronic
chr1:235288704(-) A-I      intronic
chr1:235282008(-) A-I      intronic
chr1:235282086(-) A-I      intronic
chr1:235289665(-) A-I      intronic
chr1:235280529(-) A-I      intronic
chr1:235281934(-) A-I      intronic
chr1:235283853(-) A-I      intronic
chr1:235288699(-) A-I      intronic
chr1:235288668(-) A-I      intronic
chr1:235289621(-) A-I      intronic
chr1:235278220(-) A-I      intronic
chr1:235278391(-) A-I      intronic
chr1:235289988(-) A-I      intronic
chr1:235289885(-) A-I      intronic
chr1:235289594(-) A-I      intronic
chr1:235278694(-) A-I      intronic
chr1:235289718(-) A-I      intronic
chr1:235289556(-) A-I      intronic
chr1:235278802(-) A-I      intronic
chr1:235291294(-) A-I      intronic
chr1:235289203(-) A-I      intronic
chr1:235277864(-) A-I      intronic
chr1:235277981(-) A-I      intronic
chr1:235289161(-) A-I      intronic
chr1:235279838(-) A-I      intronic
chr1:235289132(-) A-I      intronic
chr1:235278419(-) A-I      intronic
chr1:235290032(-) A-I      intronic
chr1:235289719(-) A-I      intronic
chr1:235281990(-) A-I      intronic
chr1:235289580(-) A-I      intronic
chr1:235281894(-) A-I      intronic
chr1:235283756(-) A-I      intronic
chr1:235280387(-) A-I      intronic
chr1:235282071(-) A-I      intronic
chr1:235284260(-) A-I      intronic
chr1:235278405(-) A-I      intronic
chr1:235286794(-) A-I      intronic
chr1:235279772(-) A-I      intronic
chr1:235278701(-) A-I      intronic
chr1:235278486(-) A-I      intronic
chr1:235280206(-) A-I      intronic
chr1:235278438(-) A-I      intronic
chr1:235283620(-) A-I      intronic
chr1:235279691(-) A-I      intronic
chr1:235287546(-) A-I      intronic
chr1:235280690(-) A-I      intronic
chr1:235289670(-) A-I      intronic
chr1:235279688(-) A-I      intronic
chr1:235278277(-) A-I      intronic
chr1:235289193(-) A-I      intronic
chr1:235289137(-) A-I      intronic
chr1:235279686(-) A-I      intronic
chr1:235284007(-) A-I      intronic
chr1:235281977(-) A-I      intronic
chr1:235278715(-) A-I      intronic
chr1:235287550(-) A-I      intronic
chr1:235284335(-) A-I      intronic
chr1:235289480(-) A-I      intronic
chr1:235283762(-) A-I      intronic
chr1:235289863(-) A-I      intronic
chr1:235286543(-) A-I      intronic
chr1:235278396(-) A-I      intronic
chr1:235278833(-) A-I      intronic
chr1:235284431(-) A-I      intronic
chr1:235287648(-) A-I      intronic
chr1:235290028(-) A-I      intronic
chr1:235287610(-) A-I      intronic
chr1:235278361(-) A-I      intronic
chr1:235289612(-) A-I      intronic
chr1:235278252(-) A-I      intronic
chr1:235278325(-) A-I      intronic
chr1:235280574(-) A-I      intronic
chr1:235280605(-) A-I      intronic
chr1:235279987(-) A-I      intronic
chr1:235278859(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TOMM20
chr1:235278325(-) A-I intron -    22327324
chr1:235278252(-) A-G intron -    22484847
chr1:235278277(-) A-G intron -    22484847
chr1:235278325(-) A-G intron -    22484847
chr1:235278361(-) A-G intron -    22484847
chr1:235278391(-) A-G intron -    22484847
chr1:235278399(-) A-G intron -    22484847
chr1:235278694(-) A-G intron -    22484847
chr1:235278700(-) A-G intron -    22484847
chr1:235278818(-) A-G intron -    22484847
chr1:235278859(-) A-G intron -    22484847
chr1:235280698(-) C-T intron -    22484847
chr1:235282086(-) A-G intron -    22484847
chr1:235283620(-) A-G intron -    22484847
chr1:235283756(-) A-G intron -    22484847
chr1:235283762(-) A-G intron -    22484847
chr1:235283852(-) A-G intron -    22484847
chr1:235283853(-) A-G intron -    22484847
chr1:235283859(-) A-G intron -    22484847
chr1:235284260(-) A-G intron -    22484847
chr1:235284335(-) A-G intron -    22484847
chr1:235284431(-) A-G intron -    22484847
chr1:235289203(-) A-G intron -    22484847
chr1:235289344(-) A-G intron -    22484847
chr1:235289580(-) A-G intron -    22484847
chr1:235289586(-) A-G intron -    22484847
chr1:235289594(-) A-G intron -    22484847
chr1:235289612(-) A-G intron -    22484847
chr1:235289665(-) A-G intron -    22484847
chr1:235289718(-) A-G intron -    22484847
chr1:235289863(-) A-G intron -    22484847
chr1:235290032(-) A-G intron -    22484847
chr1:235290033(-) A-G intron -    22484847
chr1:235276401(-) G-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TOMM20
chr1:235273511-235273512(-) m6A 3'UTR       24981863
chr1:235273642-235273643(-) m6A 3'UTR       24981863//22575960
chr1:235273671-235273672(-) m6A 3'UTR       24981863//22575960
chr1:235273775-235273776(-) m6A 3'UTR       -
chr1:235273828-235273829(-) m6A 3'UTR       -
chr1:235273836-235273837(-) m6A 3'UTR       -
chr1:235292016-235292017(-) m6A CDS       22575960
chr1:235292174-235292175(-) m6A 5'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TOMM20
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hsv1-miR-H4-5p
Topotecan       60700

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H4-5p
Interactor2: TOMM20

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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