Detail Information

Basic Information:


  VIRBase ID:  

VHID00087602

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-5p:           MED26:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H4-5p MED26
miRBase
Accession/Entrez ID		 MIMAT0008401 9441
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - CRSP7//CRSP70

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MED26
chr19:16692903(-) A-I      intronic
chr19:16692929(-) A-I      intronic
chr19:16692811(-) A-I      intronic
chr19:16692896(-) A-I      intronic
chr19:16721452(-) A-I      intronic
chr19:16721474(-) A-I      intronic
chr19:16721475(-) A-I      intronic
chr19:16725127(-) A-I      intronic
chr19:16725181(-) A-I      intronic
chr19:16720988(-) A-I      intronic
chr19:16711860(-) A-I      intronic
chr19:16712104(-) A-I      intronic
chr19:16712105(-) A-I      intronic
chr19:16712131(-) A-I      intronic
chr19:16721024(-) A-I      intronic
chr19:16721025(-) A-I      intronic
chr19:16723244(-) A-I      intronic
chr19:16725218(-) A-I      intronic
chr19:16721030(-) A-I      intronic
chr19:16725257(-) A-I      intronic
chr19:16723224(-) A-I      intronic
chr19:16721261(-) A-I      intronic
chr19:16725335(-) A-I      intronic
chr19:16726386(-) A-I      intronic
chr19:16721319(-) A-I      intronic
chr19:16708631(-) A-I      intronic
chr19:16721328(-) A-I      intronic
chr19:16721340(-) A-I      intronic
chr19:16708655(-) A-I      intronic
chr19:16708703(-) A-I      intronic
chr19:16708704(-) A-I      intronic
chr19:16708729(-) A-I      intronic
chr19:16711649(-) A-I      intronic
chr19:16711783(-) A-I      intronic
chr19:16711796(-) A-I      intronic
chr19:16711844(-) A-I      intronic
chr19:16725228(-) A-I      intronic
chr19:16721349(-) A-I      intronic
chr19:16721395(-) A-I      intronic
chr19:16721396(-) A-I      intronic
chr19:16723234(-) A-I      intronic
chr19:16708690(-) A-I      intronic
chr19:16712245(-) A-I      intronic
chr19:16717970(-) A-I      intronic
chr19:16708706(-) A-I      intronic
chr19:16721331(-) A-I      intronic
chr19:16711849(-) A-I      intronic
chr19:16725258(-) A-I      intronic
chr19:16708701(-) A-I      intronic
chr19:16721266(-) A-I      intronic
chr19:16720946(-) A-I      intronic
chr19:16708754(-) A-I      intronic
chr19:16708954(-) A-I      intronic
chr19:16689852(-) A-I      intronic
chr19:16721335(-) A-I      intronic
chr19:16708619(-) A-I      intronic
chr19:16708641(-) A-I      intronic
chr19:16711793(-) A-I      intronic
chr19:16711756(-) A-I      intronic
chr19:16689679(-) A-I      intronic
chr19:16708698(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MED26
chr19:16686092-16686093(-) m6A 3'UTR//exon       24981863
chr19:16686100-16686101(-) m6A 3'UTR//exon       24981863
chr19:16686108-16686109(-) m6A 3'UTR//exon       24981863//27773535
chr19:16686127-16686128(-) m6A 3'UTR//exon       24981863//27773535
chr19:16686369-16686370(-) m6A 3'UTR//exon       24284625
chr19:16686465-16686466(-) m6A 3'UTR//exon       24284625//27773535
chr19:16686517-16686518(-) m6A 3'UTR//exon       24284625//27773535
chr19:16686562-16686563(-) m6A 3'UTR//exon       24284625//27773535
chr19:16686574-16686575(-) m6A 3'UTR//exon       24284625//27773535
chr19:16686610-16686611(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22608085
chr19:16686662-16686663(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22608085
chr19:16686734-16686735(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr19:16686841-16686842(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:16686865-16686866(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:16686937-16686938(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:16687024-16687025(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:16687130-16687131(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:16687213-16687214(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:16687221-16687222(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:16687261-16687262(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:16687271-16687272(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:16687303-16687304(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:16687335-16687336(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:16687344-16687345(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:16687438-16687439(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:16687471-16687472(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:16687501-16687502(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:16687516-16687517(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:16687810-16687811(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:16687839-16687840(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:16687865-16687866(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:16687879-16687880(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:16687920-16687921(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr19:16688215-16688216(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr19:16688450-16688451(-) m6A CDS//exon       24284625//27371828//27773536
chr19:16688489-16688490(-) m6A CDS//exon       24284625//27371828//27773536
chr19:16689212-16689213(-) m6A 5'UTR//CDS//exon       27773536
chr19:16708248-16708249(-) m6A intron       27773536
chr19:16735428-16735429(-) m6A 5'UTR//intron       27773535
chr19:16735455-16735456(-) m6A 5'UTR//intron       27773535//27773536
chr19:16735465-16735466(-) m6A 5'UTR//intron       27773535//27773536
chr19:16738716-16738717(-) m6A CDS//intron       27773536
chr19:16738858-16738859(-) m6A 5'UTR//intron       24209618//27371828//27773536
chr19:16738920-16738921(-) m6A 5'UTR//intron       24209618//24981863//27371828//27773536
chr19:16738926-16738927(-) m6A 5'UTR//intron       24209618//24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate MED26
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hsv1-miR-H4-5p
Topotecan       60700

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H4-5p
Interactor2: MED26

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid
Support Database VmiReg

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