Basic Information:

  VIRBase ID:  

VHID00087111

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H4-5p:  MIMAT0008401          KCNC4:  NR_036437     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H4-5p	KCNC4
miRBase Accession/Entrez ID	MIMAT0008401	3749
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C1orf30//HKSHIIIC//KSHIIIC//KV3.4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	KCNC4	chr1:110789965(+) A-I      intronic chr1:110789949(+) A-I      intronic chr1:110789911(+) A-I      intronic chr1:110789980(+) A-I      intronic chr1:110789968(+) A-I      intronic chr1:110779743(+) A-I      intronic chr1:110790316(+) A-I      intronic chr1:110790332(+) A-I      intronic chr1:110790367(+) A-I      intronic chr1:110786888(+) A-I      intronic chr1:110790373(+) A-I      intronic chr1:110807653(+) A-I      intronic chr1:110811117(+) A-I      intronic chr1:110811251(+) A-I      intronic chr1:110789929(+) A-I      intronic chr1:110786906(+) A-I      intronic chr1:110789919(+) A-I      intronic chr1:110790015(+) A-I      intronic chr1:110790277(+) A-I      intronic chr1:110790302(+) A-I      intronic chr1:110779744(+) A-I      intronic chr1:110786879(+) A-I      intronic chr1:110779796(+) A-I      intronic chr1:110779722(+) A-I      intronic chr1:110789950(+) A-I      intronic chr1:110790041(+) A-I      intronic chr1:110790037(+) A-I      intronic chr1:110790032(+) A-I      intronic chr1:110779675(+) A-I      intronic chr1:110790070(+) A-I      intronic chr1:110790378(+) A-I      intronic chr1:110779846(+) A-I      intronic chr1:110790447(+) A-I      intronic chr1:110789869(+) A-I      intronic chr1:110779723(+) A-I      intronic chr1:110786857(+) A-I      intronic chr1:110786935(+) A-I      intronic chr1:110789943(+) A-I      intronic chr1:110779803(+) A-I      intronic chr1:110789906(+) A-I      intronic chr1:110786981(+) A-I      intronic chr1:110789874(+) A-I      intronic chr1:110779692(+) A-I      intronic chr1:110779851(+) A-I      intronic chr1:110779748(+) A-I      intronic chr1:110786865(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	KCNC4	chr1:110754170-110754171(+) m6A CDS//exon       - chr1:110754187-110754188(+) m6A CDS//exon       - chr1:110754298-110754299(+) m6A CDS//exon       24209618 chr1:110754346-110754347(+) m6A CDS//exon       24209618//22575960 chr1:110754532-110754533(+) m6A CDS//exon       24284625//24209618 chr1:110754543-110754544(+) m6A CDS//exon       24284625//24209618 chr1:110764836-110764837(+) m6A exon//intron       25456834 chr1:110764865-110764866(+) m6A exon//intron       25456834 chr1:110764952-110764953(+) m6A exon//intron       25456834 chr1:110764959-110764960(+) m6A exon//intron       25456834 chr1:110765700-110765701(+) m6A CDS//exon//intron       24284625//24209618//24981863//22608085 chr1:110765735-110765736(+) m6A CDS//exon//intron       24284625//24209618//24981863//22608085 chr1:110765829-110765830(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr1:110765841-110765842(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr1:110766171-110766172(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:110766228-110766229(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:110766443-110766444(+) m6A CDS//exon//intron       25456834//24981863 chr1:110766456-110766457(+) m6A CDS//exon//intron       24284625//25456834//24981863 chr1:110766586-110766587(+) m6A exon//intron       24284625 chr1:110766593-110766594(+) m6A exon//intron       24284625 chr1:110768722-110768723(+) m6A CDS//exon//intron       24284625 chr1:110768728-110768729(+) m6A CDS//exon//intron       24284625 chr1:110768767-110768768(+) m6A CDS//exon//intron       24284625 chr1:110773791-110773792(+) Cm intron       - chr1:110774910-110774911(+) m6A CDS//intron       24284625 chr1:110774992-110774993(+) m6A 3'UTR//intron       25456834 chr1:110775103-110775104(+) m6A 3'UTR//intron       25456834 chr1:110775615-110775616(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr1:110775623-110775624(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr1:110775651-110775652(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr1:110775659-110775660(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr1:110775665-110775666(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr1:110775689-110775690(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085 chr1:110775714-110775715(+) m6A 3'UTR//exon//intron       25456834//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	KCNC4	Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hsv1-miR-H4-5p	Topotecan       60700

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H4-5p
Interactor2: KCNC4

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg