Basic Information:

  VIRBase ID:  

VHID00085411

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-3p:  MIMAT0008400          GPSM3:  NM_001276501     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H3-3p	GPSM3
miRBase Accession/Entrez ID	MIMAT0008400	63940
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AGS4//C6orf9//G18//G18.1a//G18.1b//G18.2//NG1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GPSM3	chr6:32158629-32158630(-) m6A 3'UTR       28052920 chr6:32158656-32158657(-) m6A 3'UTR       28052920 chr6:32158698-32158699(-) m6A 3'UTR       28052920 chr6:32158757-32158758(-) m6A 3'UTR       28052920 chr6:32158834-32158835(-) m6A 3'UTR       28052920 chr6:32158944-32158945(-) m6A 3'UTR       24209618//25456834//28052920//26404942//27371828 chr6:32158958-32158959(-) m6A 3'UTR       24209618//25456834//28052920//26404942//27371828 chr6:32158967-32158968(-) m6A 3'UTR       24209618//25456834//24981863//28052920//26404942//27371828 chr6:32158986-32158987(-) m6A 3'UTR       24209618//25456834//24981863//28052920//26404942//27371828 chr6:32158991-32158992(-) m6A 3'UTR       24209618//25456834//24981863//28052920//26404942//27371828 chr6:32159039-32159040(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828 chr6:32159047-32159048(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828 chr6:32159140-32159141(-) m6A 3'UTR       24284625//24209618//28052920//27773535//27371828//27773536 chr6:32159515-32159516(-) m6A 3'UTR//CDS       - chr6:32159522-32159523(-) m6A 3'UTR//CDS       - chr6:32159564-32159565(-) m6A 3'UTR//CDS       28052920//27371828//27773536 chr6:32159630-32159631(-) m6A 3'UTR//CDS       28052920//27371828//27773536 chr6:32159641-32159642(-) m6A 3'UTR//CDS       28052920//27371828//27773536 chr6:32159646-32159647(-) m6A CDS       25456834//28052920//27371828//27773536 chr6:32159677-32159678(-) m6A CDS//intron       25456834//28052920//27371828//27773536 chr6:32159936-32159937(-) m6A CDS       25456834//28052920//27371828//27773536 chr6:32159989-32159990(-) m6A CDS       25456834//28052920//27371828//27773536 chr6:32160043-32160044(-) m6A CDS//intron       25456834//28052920//27371828//27773536 chr6:32160275-32160276(-) m6A 5'UTR//CDS       25456834//28052920//27371828//27773536 chr6:32160357-32160358(-) m6A 5'UTR//intron       28052920//27371828//27773536 chr6:32160435-32160436(-) m6A 5'UTR//intron       28052920//27371828//27773536 chr6:32160510-32160511(-) m6A 5'UTR//intron       27371828//27773536 chr6:32160515-32160516(-) m6A 5'UTR//intron       27371828//27773536 chr6:32160607-32160608(-) m6A 5'UTR//intron       25456834//28052920//27371828//27773536 chr6:32160630-32160631(-) m6A 5'UTR//intron       25456834//28052920//27371828 chr6:32160837-32160838(-) m6A 5'UTR//CDS       27371828 chr6:32163238-32163239(-) m6A 5'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GPSM3	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H3-3p
Interactor2: GPSM3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg