Basic Information:

  VIRBase ID:  

VHID00085100

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-3p:  MIMAT0008400          SLC38A7:  NR_161424     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H3-3p	SLC38A7
miRBase Accession/Entrez ID	MIMAT0008400	55238
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SNAT7

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC38A7	chr16:58710742(-) A-I      intronic chr16:58710704(-) A-I      intronic chr16:58710720(-) A-I      intronic chr16:58710694(-) A-I      intronic chr16:58710691(-) A-I      intronic chr16:58707200(-) A-I      intronic chr16:58707212(-) A-I      intronic chr16:58707229(-) A-I      intronic chr16:58703779(-) A-I      intronic chr16:58703827(-) A-I      intronic chr16:58706757(-) A-I      intronic chr16:58703767(-) A-I      intronic chr16:58716732(-) A-I      intronic chr16:58717055(-) A-I      intronic chr16:58716715(-) A-I      intronic chr16:58715881(-) A-I      intronic chr16:58715831(-) A-I      intronic chr16:58708458(-) A-I      intronic chr16:58708092(-) A-I      intronic chr16:58706956(-) A-I      intronic chr16:58706934(-) A-I      intronic chr16:58716496(-) A-I      intronic chr16:58702313(-) A-I      intronic chr16:58700045(-) A-I      3'UTR chr16:58703763(-) A-I      intronic chr16:58702494(-) A-I      intronic chr16:58716502(-) A-I      intronic chr16:58709228(-) A-I      intronic chr16:58709375(-) A-I      intronic chr16:58706683(-) A-I      intronic chr16:58708227(-) A-I      intronic chr16:58702750(-) A-I      intronic chr16:58702782(-) A-I      intronic chr16:58701921(-) A-I      intronic chr16:58707213(-) A-I      intronic chr16:58708346(-) A-I      intronic chr16:58716055(-) A-I      intronic chr16:58709415(-) A-I      intronic chr16:58700008(-) A-I      3'UTR chr16:58707268(-) A-I      intronic chr16:58703757(-) A-I      intronic chr16:58709350(-) A-I      intronic chr16:58716763(-) A-I      intronic chr16:58717056(-) A-I      intronic chr16:58707113(-) A-I      intronic chr16:58709239(-) A-I      intronic chr16:58707980(-) A-I      intronic chr16:58716768(-) A-I      intronic chr16:58716484(-) A-I      intronic chr16:58702969(-) A-I      intronic chr16:58706634(-) A-I      intronic chr16:58706611(-) A-I      intronic chr16:58716731(-) A-I      intronic chr16:58708370(-) A-I      intronic chr16:58706899(-) A-I      intronic chr16:58701817(-) A-I      intronic chr16:58707100(-) A-I      intronic chr16:58708113(-) A-I      intronic chr16:58706781(-) A-I      intronic chr16:58715961(-) A-I      intronic chr16:58716528(-) A-I      intronic chr16:58707304(-) A-I      intronic chr16:58707732(-) A-I      intronic chr16:58709297(-) A-I      intronic chr16:58709190(-) A-I      intronic chr16:58708089(-) A-I      intronic chr16:58703822(-) A-I      intronic chr16:58707433(-) A-I      intronic chr16:58715998(-) A-I      intronic chr16:58715913(-) A-I      intronic chr16:58708454(-) A-I      intronic chr16:58702684(-) A-I      intronic chr16:58709206(-) A-I      intronic chr16:58708264(-) A-I      intronic chr16:58708139(-) A-I      intronic chr16:58708091(-) A-I      intronic chr16:58709238(-) A-I      intronic chr16:58706969(-) A-I      intronic chr16:58715939(-) A-I      intronic chr16:58702694(-) A-I      intronic chr16:58709307(-) A-I      intronic chr16:58702397(-) A-I      intronic chr16:58700108(-) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC38A7	chr16:58699392-58699393(-) m6A 3'UTR       27773535 chr16:58699491-58699492(-) m6A 3'UTR       27773535 chr16:58699515-58699516(-) m6A 3'UTR       27773535 chr16:58699568-58699569(-) m6A 3'UTR       24981863//27773535 chr16:58699791-58699792(-) m6A 3'UTR       27773535 chr16:58699973-58699974(-) m6A 3'UTR       25456834//24981863//27773535 chr16:58699979-58699980(-) m6A 3'UTR       25456834//24981863//27773535 chr16:58699995-58699996(-) m6A 3'UTR       25456834//24981863//27773535 chr16:58700050-58700051(-) m6A 3'UTR       25456834//24981863//27773535 chr16:58700065-58700066(-) m6A 3'UTR       25456834//24981863//27773535 chr16:58700163-58700164(-) m6A 3'UTR       24981863 chr16:58700298-58700299(-) m6A 3'UTR       27773535 chr16:58700430-58700431(-) m6A 3'UTR       27773535 chr16:58700439-58700440(-) m6A 3'UTR       27773535 chr16:58700625-58700626(-) m6A 3'UTR       24284625//24981863//27773535 chr16:58700670-58700671(-) m6A 3'UTR       24284625//24209618//24981863//27773535 chr16:58700715-58700716(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr16:58700745-58700746(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr16:58700782-58700783(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr16:58700928-58700929(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr16:58701045-58701046(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr16:58701126-58701127(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr16:58701147-58701148(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr16:58701157-58701158(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr16:58701173-58701174(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr16:58701241-58701242(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22608085 chr16:58701270-58701271(-) m6A 3'UTR//CDS       24284625//24209618//24981863//22608085 chr16:58701326-58701327(-) m6A 3'UTR//CDS//exon       24209618 chr16:58712604-58712605(-) m6A CDS//exon//intron       - chr16:58713890-58713891(-) m6A CDS//exon//intron       24284625 chr16:58713935-58713936(-) m6A CDS//exon//intron       24284625 chr16:58713989-58713990(-) m6A CDS//exon//intron       24209618//27371828 chr16:58714057-58714058(-) m6A 5'UTR//exon//intron       24209618//27371828 chr16:58714065-58714066(-) m6A 5'UTR//exon//intron       24209618//27371828 chr16:58714113-58714114(-) m6A 5'UTR//exon//intron       24209618//27371828 chr16:58717914-58717915(-) m6A 5'UTR//exon//intron       24284625 chr16:58718006-58718007(-) m6A 5'UTR//exon//intron       24284625//24981863 chr16:58718605-58718606(-) m6A 5'UTR//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLC38A7	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H3-3p
Interactor2: SLC38A7

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg