Basic Information:

  VIRBase ID:  

VHID00084541

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-3p:  MIMAT0008400          DIP2A:  NM_001353943     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H3-3p	DIP2A
miRBase Accession/Entrez ID	MIMAT0008400	23181
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C21orf106//DIP2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	DIP2A	chr21:47893663(+) A-I      intronic chr21:47893629(+) A-I      intronic chr21:47893498(+) A-I      intronic chr21:47893380(+) A-I      intronic chr21:47893379(+) A-I      intronic chr21:47893167(+) A-I      intronic chr21:47891224(+) A-I      intronic chr21:47891206(+) A-I      intronic chr21:47891144(+) A-I      intronic chr21:47890727(+) A-I      intronic chr21:47890267(+) A-I      intronic chr21:47890202(+) A-I      intronic chr21:47884263(+) A-I      intronic chr21:47884238(+) A-I      intronic chr21:47884227(+) A-I      intronic chr21:47884221(+) A-I      intronic chr21:47884186(+) A-I      intronic chr21:47884185(+) A-I      intronic chr21:47884155(+) A-I      intronic chr21:47884153(+) A-I      intronic chr21:47884151(+) A-I      intronic chr21:47884145(+) A-I      intronic chr21:47883725(+) A-I      intronic chr21:47938591(+) A-I      intronic chr21:47938719(+) A-I      intronic chr21:47938727(+) A-I      intronic chr21:47944879(+) A-I      intronic chr21:47944900(+) A-I      intronic chr21:47944940(+) A-I      intronic chr21:47946091(+) A-I      intronic chr21:47946411(+) A-I      intronic chr21:47946449(+) A-I      intronic chr21:47884136(+) A-I      intronic chr21:47946450(+) A-I      intronic chr21:47884123(+) A-I      intronic chr21:47884108(+) A-I      intronic chr21:47883812(+) A-I      intronic chr21:47883769(+) A-I      intronic chr21:47883767(+) A-I      intronic chr21:47947282(+) A-I      intronic chr21:47947287(+) A-I      intronic chr21:47947300(+) A-I      intronic chr21:47947342(+) A-I      intronic chr21:47947436(+) A-I      intronic chr21:47947473(+) A-I      intronic chr21:47949335(+) A-I      intronic chr21:47949362(+) A-I      intronic chr21:47923168(+) A-I      intronic chr21:47915803(+) A-I      intronic chr21:47915775(+) A-I      intronic chr21:47906316(+) A-I      intronic chr21:47896832(+) A-I      intronic chr21:47883761(+) A-I      intronic chr21:47923181(+) A-I      intronic chr21:47925361(+) A-I      intronic chr21:47925359(+) A-I      intronic chr21:47923768(+) A-I      intronic chr21:47923186(+) A-I      intronic chr21:47923185(+) A-I      intronic chr21:47949363(+) A-I      intronic chr21:47928769(+) A-I      intronic chr21:47925411(+) A-I      intronic chr21:47926079(+) A-I      intronic chr21:47927714(+) A-I      intronic chr21:47932585(+) A-I      intronic chr21:47932594(+) A-I      intronic chr21:47932610(+) A-I      intronic chr21:47938523(+) A-I      intronic chr21:47928748(+) A-I      intronic chr21:47880748(+) A-I      intronic chr21:47880965(+) A-I      intronic chr21:47881096(+) A-I      intronic chr21:47925401(+) A-I      intronic chr21:47883708(+) A-I      intronic chr21:47896831(+) A-I      intronic chr21:47896799(+) A-I      intronic chr21:47896790(+) A-I      intronic chr21:47896631(+) A-I      intronic chr21:47880736(+) A-I      intronic chr21:47928839(+) A-I      intronic chr21:47880956(+) A-I      intronic chr21:47885266(+) A-I      intronic chr21:47880797(+) A-I      intronic chr21:47891179(+) A-I      intronic chr21:47934159(+) A-I      intronic chr21:47906292(+) A-I      intronic chr21:47923822(+) A-I      intronic chr21:47886374(+) A-I      intronic chr21:47890119(+) A-I      intronic chr21:47886331(+) A-I      intronic chr21:47896708(+) A-I      intronic chr21:47890530(+) A-I      intronic chr21:47891080(+) A-I      intronic chr21:47880724(+) A-I      intronic chr21:47922118(+) A-I      intronic chr21:47891007(+) A-I      intronic chr21:47897540(+) A-I      intronic chr21:47893229(+) A-I      intronic chr21:47897626(+) A-I      intronic chr21:47890519(+) A-I      intronic chr21:47896734(+) A-I      intronic chr21:47887300(+) A-I      intronic chr21:47894580(+) A-I      intronic chr21:47896699(+) A-I      intronic chr21:47897604(+) A-I      intronic chr21:47906381(+) A-I      intronic chr21:47905774(+) A-I      intronic chr21:47890417(+) A-I      intronic chr21:47886490(+) A-I      intronic chr21:47939994(+) A-I      intronic chr21:47885366(+) A-I      intronic chr21:47887764(+) A-I      intronic chr21:47893256(+) A-I      intronic chr21:47890531(+) A-I      intronic chr21:47881029(+) A-I      intronic chr21:47880964(+) A-I      intronic chr21:47880663(+) A-I      intronic chr21:47893323(+) A-I      intronic chr21:47922994(+) A-I      intronic chr21:47885303(+) A-I      intronic chr21:47947339(+) A-I      intronic chr21:47884159(+) A-I      intronic chr21:47890212(+) A-I      intronic chr21:47923034(+) A-I      intronic chr21:47934160(+) A-I      intronic chr21:47880948(+) A-I      intronic chr21:47881744(+) A-I      intronic chr21:47922583(+) A-I      intronic chr21:47895894(+) A-I      intronic chr21:47883653(+) A-I      intronic chr21:47906257(+) A-I      intronic chr21:47881782(+) A-I      intronic chr21:47923662(+) A-I      intronic chr21:47883787(+) A-I      intronic chr21:47932835(+) A-I      intronic chr21:47885412(+) A-I      intronic chr21:47891018(+) A-I      intronic chr21:47880746(+) A-I      intronic chr21:47893255(+) A-I      intronic chr21:47915259(+) A-I      intronic chr21:47894582(+) A-I      intronic chr21:47905863(+) A-I      intronic chr21:47906221(+) A-I      intronic chr21:47886427(+) A-I      intronic chr21:47888099(+) A-I      intronic chr21:47893568(+) A-I      intronic chr21:47938649(+) A-I      intronic chr21:47893546(+) A-I      intronic chr21:47906307(+) A-I      intronic chr21:47886445(+) A-I      intronic chr21:47944980(+) A-I      intronic chr21:47888056(+) A-I      intronic chr21:47893664(+) A-I      intronic chr21:47885340(+) A-I      intronic chr21:47881090(+) A-I      intronic chr21:47915262(+) A-I      intronic chr21:47896131(+) A-I      intronic chr21:47897405(+) A-I      intronic chr21:47883825(+) A-I      intronic chr21:47891158(+) A-I      intronic chr21:47888059(+) A-I      intronic chr21:47906204(+) A-I      intronic chr21:47891218(+) A-I      intronic chr21:47890537(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	DIP2A	chr21:47886331(+) A-I intron -    15258596 chr21:47886374(+) A-I intron -    15258596 chr21:47886427(+) A-I intron -    15258596

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	DIP2A	chr21:47965096-47965097(+) m6A CDS//exon       - chr21:47965847-47965848(+) m6A CDS//exon       - chr21:47965935-47965936(+) m6A exon//intron       - chr21:47972876-47972877(+) m6A exon//intron       - chr21:47974813-47974814(+) m6A CDS//exon       - chr21:47974821-47974822(+) m6A CDS//exon       - chr21:47974840-47974841(+) m6A CDS//exon       - chr21:47975486-47975487(+) m6A exon//intron       - chr21:47975505-47975506(+) m6A exon//intron       - chr21:47977309-47977310(+) m6A exon//intron       - chr21:47987298-47987299(+) m6A CDS//exon       24981863 chr21:47987353-47987354(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960 chr21:47987425-47987426(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr21:47987506-47987507(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr21:47987602-47987603(+) m6A 3'UTR//exon       24284625//24209618//24981863//22575960//22608085 chr21:47987626-47987627(+) m6A 3'UTR//exon       24284625//24209618//24981863//22575960//22608085 chr21:47987743-47987744(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr21:47987764-47987765(+) Cm 3'UTR//exon       - chr21:47987775-47987776(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr21:47987958-47987959(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr21:47987965-47987966(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr21:47987982-47987983(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr21:47988012-47988013(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr21:47988069-47988070(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085 chr21:47988353-47988354(+) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr21:47988438-47988439(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr21:47988480-47988481(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr21:47988503-47988504(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr21:47988765-47988766(+) m6A 3'UTR//exon       - chr21:47989247-47989248(+) m6A 3'UTR//exon       24981863 chr21:47989361-47989362(+) m6A 3'UTR//exon       24981863//27773535 chr21:47989410-47989411(+) m6A 3'UTR//exon       27773535 chr21:47989450-47989451(+) m6A 3'UTR//exon       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	DIP2A	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H3-3p
Interactor2: DIP2A

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg