Detail Information

Basic Information:


  VIRBase ID:  

VHID00084474

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-3p:           CLSTN1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H3-3p CLSTN1
miRBase
Accession/Entrez ID		 MIMAT0008400 22883
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - ALC-ALPHA//alcalpha1//alcalpha2//CDHR12//CST-1//CSTN1//PIK3CD//XB31alpha

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CLSTN1
chr1:9821439(-) A-I      intronic
chr1:9823087(-) A-I      intronic
chr1:9831372(-) A-I      intronic
chr1:9831430(-) A-I      intronic
chr1:9831431(-) A-I      intronic
chr1:9832127(-) A-I      intronic
chr1:9832146(-) A-I      intronic
chr1:9832152(-) A-I      intronic
chr1:9852158(-) A-I      intronic
chr1:9852164(-) A-I      intronic
chr1:9852171(-) A-I      intronic
chr1:9832503(-) A-I      intronic
chr1:9859867(-) A-I      intronic
chr1:9859871(-) A-I      intronic
chr1:9830988(-) A-I      intronic
chr1:9821385(-) A-I      intronic
chr1:9821416(-) A-I      intronic
chr1:9859891(-) A-I      intronic
chr1:9832442(-) A-I      intronic
chr1:9859915(-) A-I      intronic
chr1:9831401(-) A-I      intronic
chr1:9859936(-) A-I      intronic
chr1:9821421(-) A-I      intronic
chr1:9821443(-) A-I      intronic
chr1:9825497(-) A-I      intronic
chr1:9829939(-) A-I      intronic
chr1:9829924(-) A-I      intronic
chr1:9829896(-) A-I      intronic
chr1:9827478(-) A-I      intronic
chr1:9827344(-) A-I      intronic
chr1:9827342(-) A-I      intronic
chr1:9826635(-) A-I      intronic
chr1:9826632(-) A-I      intronic
chr1:9825522(-) A-I      intronic
chr1:9824600(-) A-I      intronic
chr1:9824595(-) A-I      intronic
chr1:9824532(-) A-I      intronic
chr1:9824515(-) A-I      intronic
chr1:9824491(-) A-I      intronic
chr1:9824485(-) A-I      intronic
chr1:9824477(-) A-I      intronic
chr1:9823023(-) A-I      intronic
chr1:9818510(-) A-I      intronic
chr1:9818324(-) A-I      intronic
chr1:9818323(-) A-I      intronic
chr1:9818318(-) A-I      intronic
chr1:9818233(-) A-I      intronic
chr1:9818221(-) A-I      intronic
chr1:9818212(-) A-I      intronic
chr1:9818208(-) A-I      intronic
chr1:9818137(-) A-I      intronic
chr1:9817536(-) A-I      intronic
chr1:9817496(-) A-I      intronic
chr1:9817494(-) A-I      intronic
chr1:9817463(-) A-I      intronic
chr1:9817031(-) A-I      intronic
chr1:9817020(-) A-I      intronic
chr1:9816931(-) A-I      intronic
chr1:9814830(-) A-I      intronic
chr1:9814803(-) A-I      intronic
chr1:9814570(-) A-I      intronic
chr1:9814535(-) A-I      intronic
chr1:9814505(-) A-I      intronic
chr1:9814495(-) A-I      intronic
chr1:9814460(-) A-I      intronic
chr1:9814435(-) A-I      intronic
chr1:9814144(-) A-I      intronic
chr1:9814138(-) A-I      intronic
chr1:9814019(-) A-I      intronic
chr1:9809141(-) A-I      intronic
chr1:9809129(-) A-I      intronic
chr1:9809090(-) A-I      intronic
chr1:9808754(-) A-I      intronic
chr1:9807990(-) A-I      intronic
chr1:9807937(-) A-I      intronic
chr1:9807683(-) A-I      intronic
chr1:9807563(-) A-I      intronic
chr1:9806764(-) A-I      intronic
chr1:9806099(-) A-I      intronic
chr1:9806008(-) A-I      intronic
chr1:9805911(-) A-I      intronic
chr1:9805658(-) A-I      intronic
chr1:9805647(-) A-I      intronic
chr1:9805606(-) A-I      intronic
chr1:9805494(-) A-I      intronic
chr1:9800391(-) A-I      intronic
chr1:9800229(-) A-I      intronic
chr1:9800138(-) A-I      intronic
chr1:9799986(-) A-I      intronic
chr1:9799672(-) A-I      intronic
chr1:9799658(-) A-I      intronic
chr1:9798989(-) A-I      intronic
chr1:9798885(-) A-I      intronic
chr1:9798871(-) A-I      intronic
chr1:9798867(-) A-I      intronic
chr1:9798780(-) A-I      intronic
chr1:9798728(-) A-I      intronic
chr1:9866330(-) A-I      intronic
chr1:9880227(-) A-I      intronic
chr1:9878993(-) A-I      intronic
chr1:9878983(-) A-I      intronic
chr1:9878271(-) A-I      intronic
chr1:9878256(-) A-I      intronic
chr1:9878204(-) A-I      intronic
chr1:9878133(-) A-I      intronic
chr1:9878126(-) A-I      intronic
chr1:9876837(-) A-I      intronic
chr1:9875882(-) A-I      intronic
chr1:9875837(-) A-I      intronic
chr1:9875826(-) A-I      intronic
chr1:9874420(-) A-I      intronic
chr1:9874370(-) A-I      intronic
chr1:9874351(-) A-I      intronic
chr1:9874348(-) A-I      intronic
chr1:9874138(-) A-I      intronic
chr1:9873913(-) A-I      intronic
chr1:9873901(-) A-I      intronic
chr1:9873513(-) A-I      intronic
chr1:9873505(-) A-I      intronic
chr1:9873457(-) A-I      intronic
chr1:9873321(-) A-I      intronic
chr1:9871970(-) A-I      intronic
chr1:9871961(-) A-I      intronic
chr1:9870471(-) A-I      intronic
chr1:9870447(-) A-I      intronic
chr1:9866325(-) A-I      intronic
chr1:9866266(-) A-I      intronic
chr1:9866236(-) A-I      intronic
chr1:9863153(-) A-I      intronic
chr1:9861887(-) A-I      intronic
chr1:9859756(-) A-I      intronic
chr1:9859752(-) A-I      intronic
chr1:9859744(-) A-I      intronic
chr1:9858052(-) A-I      intronic
chr1:9857986(-) A-I      intronic
chr1:9856695(-) A-I      intronic
chr1:9856566(-) A-I      intronic
chr1:9856564(-) A-I      intronic
chr1:9855927(-) A-I      intronic
chr1:9855901(-) A-I      intronic
chr1:9855361(-) A-I      intronic
chr1:9854660(-) A-I      intronic
chr1:9854634(-) A-I      intronic
chr1:9854571(-) A-I      intronic
chr1:9852240(-) A-I      intronic
chr1:9852131(-) A-I      intronic
chr1:9851762(-) A-I      intronic
chr1:9851758(-) A-I      intronic
chr1:9851573(-) A-I      intronic
chr1:9851559(-) A-I      intronic
chr1:9851409(-) A-I      intronic
chr1:9851058(-) A-I      intronic
chr1:9851041(-) A-I      intronic
chr1:9851002(-) A-I      intronic
chr1:9849870(-) A-I      intronic
chr1:9845260(-) A-I      intronic
chr1:9845259(-) A-I      intronic
chr1:9845243(-) A-I      intronic
chr1:9842941(-) A-I      intronic
chr1:9841720(-) A-I      intronic
chr1:9841719(-) A-I      intronic
chr1:9841506(-) A-I      intronic
chr1:9832518(-) A-I      intronic
chr1:9832329(-) A-I      intronic
chr1:9832049(-) A-I      intronic
chr1:9831620(-) A-I      intronic
chr1:9831489(-) A-I      intronic
chr1:9831487(-) A-I      intronic
chr1:9831375(-) A-I      intronic
chr1:9831365(-) A-I      intronic
chr1:9831358(-) A-I      intronic
chr1:9831355(-) A-I      intronic
chr1:9831025(-) A-I      intronic
chr1:9831004(-) A-I      intronic
chr1:9830975(-) A-I      intronic
chr1:9830964(-) A-I      intronic
chr1:9830951(-) A-I      intronic
chr1:9830895(-) A-I      intronic
chr1:9830860(-) A-I      intronic
chr1:9829966(-) A-I      intronic
chr1:9806588(-) A-I      intronic
chr1:9807733(-) A-I      intronic
chr1:9824573(-) A-I      intronic
chr1:9808728(-) A-I      intronic
chr1:9806027(-) A-I      intronic
chr1:9830968(-) A-I      intronic
chr1:9813776(-) A-I      intronic
chr1:9832173(-) A-I      intronic
chr1:9877256(-) A-I      intronic
chr1:9859127(-) A-I      intronic
chr1:9829855(-) A-I      intronic
chr1:9854464(-) A-I      intronic
chr1:9878335(-) A-I      intronic
chr1:9807629(-) A-I      intronic
chr1:9846088(-) A-I      intronic
chr1:9821402(-) A-I      intronic
chr1:9844562(-) A-I      intronic
chr1:9805887(-) A-I      intronic
chr1:9852217(-) A-I      intronic
chr1:9846456(-) A-I      intronic
chr1:9841782(-) A-I      intronic
chr1:9807615(-) A-I      intronic
chr1:9831417(-) A-I      intronic
chr1:9806672(-) A-I      intronic
chr1:9839374(-) A-I      intronic
chr1:9856198(-) A-I      intronic
chr1:9823122(-) A-I      intronic
chr1:9814083(-) A-I      intronic
chr1:9820814(-) A-I      intronic
chr1:9869659(-) A-I      intronic
chr1:9820859(-) A-I      intronic
chr1:9873305(-) A-I      intronic
chr1:9807072(-) A-I      intronic
chr1:9805583(-) A-I      intronic
chr1:9819613(-) A-I      intronic
chr1:9814140(-) A-I      intronic
chr1:9824654(-) A-I      intronic
chr1:9808643(-) A-I      intronic
chr1:9823158(-) A-I      intronic
chr1:9852156(-) A-I      intronic
chr1:9872006(-) A-I      intronic
chr1:9881464(-) A-I      intronic
chr1:9810526(-) A-I      intronic
chr1:9864843(-) A-I      intronic
chr1:9807114(-) A-I      intronic
chr1:9793076(-) A-I      intronic
chr1:9826636(-) A-I      intronic
chr1:9803905(-) A-I      intronic
chr1:9809241(-) A-I      intronic
chr1:9814590(-) A-I      intronic
chr1:9863778(-) A-I      intronic
chr1:9825555(-) A-I      intronic
chr1:9805543(-) A-I      intronic
chr1:9823292(-) A-I      intronic
chr1:9823164(-) A-I      intronic
chr1:9804887(-) A-I      intronic
chr1:9852239(-) A-I      intronic
chr1:9851647(-) A-I      intronic
chr1:9807732(-) A-I      intronic
chr1:9808608(-) A-I      intronic
chr1:9808716(-) A-I      intronic
chr1:9799639(-) A-I      intronic
chr1:9839410(-) A-I      intronic
chr1:9807155(-) A-I      intronic
chr1:9806101(-) A-I      intronic
chr1:9878347(-) A-I      intronic
chr1:9846649(-) A-I      intronic
chr1:9806601(-) A-I      intronic
chr1:9821491(-) A-I      intronic
chr1:9839368(-) A-I      intronic
chr1:9807666(-) A-I      intronic
chr1:9829856(-) A-I      intronic
chr1:9824478(-) A-I      intronic
chr1:9876909(-) A-I      intronic
chr1:9797093(-) A-I      intronic
chr1:9801767(-) A-I      intronic
chr1:9872901(-) A-I      intronic
chr1:9793083(-) A-I      intronic
chr1:9865152(-) A-I      intronic
chr1:9799684(-) A-I      intronic
chr1:9880411(-) A-I      intronic
chr1:9820833(-) A-I      intronic
chr1:9813943(-) A-I      intronic
chr1:9807858(-) A-I      intronic
chr1:9810736(-) A-I      intronic
chr1:9806615(-) A-I      intronic
chr1:9817100(-) A-I      intronic
chr1:9877162(-) A-I      intronic
chr1:9807912(-) A-I      intronic
chr1:9823135(-) A-I      intronic
chr1:9876802(-) A-I      intronic
chr1:9839987(-) A-I      intronic
chr1:9851473(-) A-I      intronic
chr1:9809186(-) A-I      intronic
chr1:9856154(-) A-I      intronic
chr1:9874819(-) A-I      intronic
chr1:9851565(-) A-I      intronic
chr1:9820843(-) A-I      intronic
chr1:9820854(-) A-I      intronic
chr1:9878359(-) A-I      intronic
chr1:9823293(-) A-I      intronic
chr1:9819635(-) A-I      intronic
chr1:9823593(-) A-I      intronic
chr1:9805615(-) A-I      intronic
chr1:9832426(-) A-I      intronic
chr1:9825929(-) A-I      intronic
chr1:9832458(-) A-I      intronic
chr1:9823883(-) A-I      intronic
chr1:9851944(-) A-I      intronic
chr1:9805975(-) A-I      intronic
chr1:9823030(-) A-I      intronic
chr1:9808820(-) A-I      intronic
chr1:9874724(-) A-I      intronic
chr1:9880437(-) A-I      intronic
chr1:9851465(-) A-I      intronic
chr1:9878134(-) A-I      intronic
chr1:9876801(-) A-I      intronic
chr1:9836221(-) A-I      intronic
chr1:9845347(-) A-I      intronic
chr1:9807595(-) A-I      intronic
chr1:9816965(-) A-I      intronic
chr1:9832163(-) A-I      intronic
chr1:9804950(-) A-I      intronic
chr1:9818997(-) A-I      intronic
chr1:9806539(-) A-I      intronic
chr1:9807703(-) A-I      intronic
chr1:9824473(-) A-I      intronic
chr1:9846087(-) A-I      intronic
chr1:9839451(-) A-I      intronic
chr1:9818667(-) A-I      intronic
chr1:9861793(-) A-I      intronic
chr1:9823148(-) A-I      intronic
chr1:9810763(-) A-I      intronic
chr1:9878354(-) A-I      intronic
chr1:9799884(-) A-I      intronic
chr1:9842970(-) A-I      intronic
chr1:9825507(-) A-I      intronic
chr1:9803848(-) A-I      intronic
chr1:9874725(-) A-I      intronic
chr1:9863055(-) A-I      intronic
chr1:9825568(-) A-I      intronic
chr1:9866265(-) A-I      intronic
chr1:9808719(-) A-I      intronic
chr1:9859036(-) A-I      intronic
chr1:9853337(-) A-I      intronic
chr1:9807603(-) A-I      intronic
chr1:9831037(-) A-I      intronic
chr1:9803891(-) A-I      intronic
chr1:9824583(-) A-I      intronic
chr1:9800203(-) A-I      intronic
chr1:9799654(-) A-I      intronic
chr1:9853176(-) A-I      intronic
chr1:9824523(-) A-I      intronic
chr1:9809065(-) A-I      intronic
chr1:9825491(-) A-I      intronic
chr1:9805082(-) A-I      intronic
chr1:9853182(-) A-I      intronic
chr1:9813987(-) A-I      intronic
chr1:9814369(-) A-I      intronic
chr1:9818172(-) A-I      intronic
chr1:9806593(-) A-I      intronic
chr1:9803744(-) A-I      intronic
chr1:9805523(-) A-I      intronic
chr1:9880414(-) A-I      intronic
chr1:9807185(-) A-I      intronic
chr1:9823265(-) A-I      intronic
chr1:9820811(-) A-I      intronic
chr1:9833950(-) A-I      intronic
chr1:9816847(-) A-I      intronic
chr1:9851753(-) A-I      intronic
chr1:9806029(-) A-I      intronic
chr1:9820195(-) A-I      intronic
chr1:9880204(-) A-I      intronic
chr1:9824503(-) A-I      intronic
chr1:9824512(-) A-I      intronic
chr1:9851838(-) A-I      intronic
chr1:9843013(-) A-I      intronic
chr1:9800397(-) A-I      intronic
chr1:9830940(-) A-I      intronic
chr1:9813714(-) A-I      intronic
chr1:9816975(-) A-I      intronic
chr1:9851468(-) A-I      intronic
chr1:9843794(-) A-I      intronic
chr1:9865142(-) A-I      intronic
chr1:9820710(-) A-I      intronic
chr1:9826712(-) A-I      intronic
chr1:9851542(-) A-I      intronic
chr1:9807695(-) A-I      intronic
chr1:9879131(-) A-I      intronic
chr1:9845312(-) A-I      intronic
chr1:9880321(-) A-I      intronic
chr1:9817495(-) A-I      intronic
chr1:9849819(-) A-I      intronic
chr1:9850947(-) A-I      intronic
chr1:9829940(-) A-I      intronic
chr1:9846537(-) A-I      intronic
chr1:9852085(-) A-I      intronic
chr1:9803770(-) A-I      intronic
chr1:9855891(-) A-I      intronic
chr1:9812754(-) A-I      intronic
chr1:9821407(-) A-I      intronic
chr1:9806689(-) A-I      intronic
chr1:9856545(-) A-I      intronic
chr1:9821403(-) A-I      intronic
chr1:9824432(-) A-I      intronic
chr1:9804847(-) A-I      intronic
chr1:9877653(-) A-I      intronic
chr1:9799645(-) A-I      intronic
chr1:9878138(-) A-I      intronic
chr1:9799735(-) A-I      intronic
chr1:9844167(-) A-I      intronic
chr1:9806663(-) A-I      intronic
chr1:9866185(-) A-I      intronic
chr1:9825669(-) A-I      intronic
chr1:9798974(-) A-I      intronic
chr1:9810609(-) A-I      intronic
chr1:9876972(-) A-I      intronic
chr1:9825591(-) A-I      intronic
chr1:9810608(-) A-I      intronic
chr1:9800210(-) A-I      intronic
chr1:9874154(-) A-I      intronic
chr1:9818229(-) A-I      intronic
chr1:9806660(-) A-I      intronic
chr1:9878341(-) A-I      intronic
chr1:9817571(-) A-I      intronic
chr1:9818148(-) A-I      intronic
chr1:9803689(-) A-I      intronic
chr1:9819612(-) A-I      intronic
chr1:9805899(-) A-I      intronic
chr1:9832396(-) A-I      intronic
chr1:9813838(-) A-I      intronic
chr1:9793066(-) A-I      intronic
chr1:9824546(-) A-I      intronic
chr1:9808723(-) A-I      intronic
chr1:9809139(-) A-I      intronic
chr1:9856102(-) A-I      intronic
chr1:9872073(-) A-I      intronic
chr1:9876977(-) A-I      intronic
chr1:9826460(-) A-I      intronic
chr1:9825485(-) A-I      intronic
chr1:9808657(-) A-I      intronic
chr1:9823299(-) A-I      intronic
chr1:9803726(-) A-I      intronic
chr1:9805532(-) A-I      intronic
chr1:9807715(-) A-I      intronic
chr1:9874283(-) A-I      intronic
chr1:9825592(-) A-I      intronic
chr1:9805005(-) A-I      intronic
chr1:9864889(-) A-I      intronic
chr1:9814573(-) A-I      intronic
chr1:9851972(-) A-I      intronic
chr1:9805471(-) A-I      intronic
chr1:9843426(-) A-I      intronic
chr1:9810503(-) A-I      intronic
chr1:9792359(-) A-I      intronic
chr1:9848156(-) A-I      intronic
chr1:9814655(-) A-I      intronic
chr1:9807757(-) A-I      intronic
chr1:9850935(-) A-I      intronic
chr1:9799710(-) A-I      intronic
chr1:9810590(-) A-I      intronic
chr1:9831667(-) A-I      intronic
chr1:9824612(-) A-I      intronic
chr1:9805900(-) A-I      intronic
chr1:9864992(-) A-I      intronic
chr1:9821494(-) A-I      intronic
chr1:9861639(-) A-I      intronic
chr1:9862955(-) A-I      intronic
chr1:9876842(-) A-I      intronic
chr1:9800146(-) A-I      intronic
chr1:9848091(-) A-I      intronic
chr1:9861817(-) A-I      intronic
chr1:9819406(-) A-I      intronic
chr1:9809100(-) A-I      intronic
chr1:9879125(-) A-I      intronic
chr1:9879032(-) A-I      intronic
chr1:9805997(-) A-I      intronic
chr1:9863054(-) A-I      intronic
chr1:9814534(-) A-I      intronic
chr1:9808613(-) A-I      intronic
chr1:9809001(-) A-I      intronic
chr1:9799699(-) A-I      intronic
chr1:9825330(-) A-I      intronic
chr1:9818163(-) A-I      intronic
chr1:9820726(-) A-I      intronic
chr1:9804949(-) A-I      intronic
chr1:9813912(-) A-I      intronic
chr1:9807110(-) A-I      intronic
chr1:9818554(-) A-I      intronic
chr1:9857985(-) A-I      intronic
chr1:9823077(-) A-I      intronic
chr1:9876978(-) A-I      intronic
chr1:9809023(-) A-I      intronic
chr1:9861869(-) A-I      intronic
chr1:9872971(-) A-I      intronic
chr1:9826606(-) A-I      intronic
chr1:9804842(-) A-I      intronic
chr1:9814073(-) A-I      intronic
chr1:9858994(-) A-I      intronic
chr1:9824538(-) A-I      intronic
chr1:9827355(-) A-I      intronic
chr1:9800147(-) A-I      intronic
chr1:9818628(-) A-I      intronic
chr1:9821423(-) A-I      intronic
chr1:9800393(-) A-I      intronic
chr1:9854456(-) A-I      intronic
chr1:9876937(-) A-I      intronic
chr1:9851564(-) A-I      intronic
chr1:9846455(-) A-I      intronic
chr1:9824529(-) A-I      intronic
chr1:9831625(-) A-I      intronic
chr1:9863081(-) A-I      intronic
chr1:9824507(-) A-I      intronic
chr1:9872112(-) A-I      intronic
chr1:9851687(-) A-I      intronic
chr1:9809221(-) A-I      intronic
chr1:9820706(-) A-I      intronic
chr1:9806005(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CLSTN1
chr1:9799639(-) A-G intron -    22484847
chr1:9799654(-) A-G intron -    22484847
chr1:9799710(-) A-G intron -    22484847
chr1:9800393(-) A-G intron -    22484847
chr1:9800397(-) A-G intron -    22484847
chr1:9805005(-) A-G intron -    22484847
chr1:9805583(-) A-G intron -    22484847
chr1:9805615(-) A-G intron -    22484847
chr1:9805887(-) A-G intron -    22484847
chr1:9807110(-) A-G intron -    22484847
chr1:9807155(-) A-G intron -    22484847
chr1:9807603(-) A-G intron -    22484847
chr1:9807615(-) A-G intron -    22484847
chr1:9807629(-) A-G intron -    22484847
chr1:9807666(-) A-G intron -    22484847
chr1:9807695(-) A-G intron -    22484847
chr1:9807703(-) A-G intron -    22484847
chr1:9807715(-) A-G intron -    22484847
chr1:9807757(-) A-G intron -    22484847
chr1:9807912(-) A-G intron -    22484847
chr1:9809221(-) A-G intron -    22484847
chr1:9809241(-) A-G intron -    22484847
chr1:9812754(-) A-G intron -    22484847
chr1:9813776(-) A-G intron -    22484847
chr1:9813838(-) A-G intron -    22484847
chr1:9813943(-) A-G intron -    22484847
chr1:9814073(-) A-G intron -    22484847
chr1:9814369(-) A-G intron -    22484847
chr1:9814534(-) A-G intron -    22484847
chr1:9814573(-) A-G intron -    22484847
chr1:9814590(-) A-G intron -    22484847
chr1:9817495(-) A-G intron -    22484847
chr1:9818229(-) A-G intron -    22484847
chr1:9823293(-) A-G intron -    22484847
chr1:9823299(-) A-G intron -    22484847
chr1:9824478(-) A-G intron -    22484847
chr1:9824538(-) A-G intron -    22484847
chr1:9825330(-) A-G intron -    22484847
chr1:9825555(-) A-G intron -    22484847
chr1:9825568(-) A-G intron -    22484847
chr1:9826606(-) A-G intron -    22484847
chr1:9826636(-) A-G intron -    22484847
chr1:9826712(-) A-G intron -    22484847
chr1:9829940(-) A-G intron -    22484847
chr1:9830968(-) A-G intron -    22484847
chr1:9845312(-) A-G intron -    22484847
chr1:9849819(-) A-G intron -    22484847
chr1:9850935(-) A-G intron -    22484847
chr1:9850947(-) A-G intron -    22484847
chr1:9851564(-) A-G intron -    22484847
chr1:9851565(-) A-G intron -    22484847
chr1:9851753(-) A-G intron -    22484847
chr1:9851972(-) A-G intron -    22484847
chr1:9852156(-) A-G intron -    22484847
chr1:9856545(-) A-G intron -    22484847
chr1:9861869(-) A-G intron -    22484847
chr1:9863778(-) A-G intron -    22484847
chr1:9864843(-) A-G intron -    22484847
chr1:9872006(-) A-G intron -    22484847
chr1:9872073(-) A-G intron -    22484847
chr1:9872112(-) A-G intron -    22484847
chr1:9873305(-) A-G intron -    22484847
chr1:9874725(-) A-G intron -    22484847
chr1:9876801(-) A-G intron -    22484847
chr1:9876802(-) A-G intron -    22484847
chr1:9876842(-) A-G intron -    22484847
chr1:9876977(-) A-G intron -    22484847
chr1:9877256(-) A-G intron -    22484847
chr1:9877653(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CLSTN1
chr1:9789515-9789516(-) m6A 3'UTR//exon       24284625//25456834//26404942//27371828
chr1:9789622-9789623(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828
chr1:9789641-9789642(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828
chr1:9789842-9789843(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27371828//22608085
chr1:9789950-9789951(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828
chr1:9790001-9790002(-) Am 3'UTR//exon       -
chr1:9790017-9790018(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535
chr1:9790135-9790136(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr1:9790200-9790201(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828
chr1:9790260-9790261(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536
chr1:9790412-9790413(-) m6A 3'UTR//exon       24284625//24209618//25456834//27773535//27371828//27773536//22575960
chr1:9790453-9790454(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr1:9790527-9790528(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960
chr1:9790689-9790690(-) m1A CDS//exon       26863196
chr1:9790752-9790753(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960
chr1:9791236-9791237(-) m6A exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr1:9791306-9791307(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr1:9791330-9791331(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr1:9791346-9791347(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr1:9791876-9791877(-) m6A CDS//exon       27773535
chr1:9791921-9791922(-) m6A CDS//exon       27773535
chr1:9793549-9793550(-) m6A CDS       27773535
chr1:9793597-9793598(-) m6A CDS       27773535//27371828
chr1:9794048-9794049(-) m6A CDS       24284625//27773535//27371828//27773536
chr1:9794094-9794095(-) m6A CDS       24284625//24981863//26404942//27773535//27371828//27773536
chr1:9794121-9794122(-) m6A CDS       24284625//24981863//26404942//27773535//27371828//27773536
chr1:9795013-9795014(-) m6A CDS       24284625//27773535//27371828//27773536
chr1:9795547-9795548(-) m6A CDS       27773535
chr1:9795581-9795582(-) m6A CDS       27773535
chr1:9795626-9795627(-) m6A CDS       27773535
chr1:9804479-9804480(-) m6A CDS       27371828//27773536
chr1:9804507-9804508(-) m6A CDS       27371828//27773536
chr1:9804644-9804645(-) m6A CDS       27371828//27773536
chr1:9809553-9809554(-) m6A CDS//exon       27773535//27773536
chr1:9809584-9809585(-) m6A CDS//exon       27773535
chr1:9809632-9809633(-) m6A CDS//exon       27773535
chr1:9809697-9809698(-) m6A CDS//exon       24981863//27773535
chr1:9809930-9809931(-) m6A CDS//exon       24981863//26404942//27773535
chr1:9809943-9809944(-) m6A CDS//exon       24981863//26404942//27773535
chr1:9809958-9809959(-) m6A CDS//exon       24981863//26404942//27773535
chr1:9810016-9810017(-) m6A exon//intron       24981863//27773535
chr1:9810030-9810031(-) m6A exon//intron       27773535
chr1:9815203-9815204(-) m6A CDS       24981863//26404942
chr1:9815243-9815244(-) m6A CDS       24981863//26404942
chr1:9815261-9815262(-) m6A CDS       24981863//26404942
chr1:9815266-9815267(-) m6A CDS       24981863//26404942
chr1:9883909-9883910(-) m6A 5'UTR       24209618//24981863//27371828//27773536
chr1:9884045-9884046(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CLSTN1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|HeLa-S3 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H3-3p
Interactor2: CLSTN1

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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