Basic Information:

  VIRBase ID:  

VHID00083577

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-3p:  MIMAT0008400          PGAM1:  NM_002629     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H3-3p	PGAM1
miRBase Accession/Entrez ID	MIMAT0008400	5223
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HEL-S-35//PGAM-B//PGAMA

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PGAM1	chr10:99189706(+) A-I      intronic chr10:99188884(+) A-I      intronic chr10:99189647(+) A-I      intronic chr10:99189651(+) A-I      intronic chr10:99189813(+) A-I      intronic chr10:99188925(+) A-I      intronic chr10:99189650(+) A-I      intronic chr10:99189812(+) A-I      intronic chr10:99189748(+) A-I      intronic chr10:99189724(+) A-I      intronic chr10:99189682(+) A-I      intronic chr10:99189809(+) A-I      intronic chr10:99189715(+) A-I      intronic chr10:99189758(+) A-I      intronic chr10:99189617(+) A-I      intronic chr10:99189662(+) A-I      intronic chr10:99189627(+) A-I      intronic chr10:99189649(+) A-I      intronic chr10:99189744(+) A-I      intronic chr10:99189123(+) A-I      intronic chr10:99188930(+) A-I      intronic chr10:99189753(+) A-I      intronic chr10:99191594(+) A-I      intronic chr10:99189652(+) A-I      intronic chr10:99189656(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PGAM1	chr10:99189617(+) A-I intron -    22327324 chr10:99189656(+) A-I intron -    22327324 chr10:99189812(+) A-I intron -    22327324 chr10:99189617(+) A-G intron -    22484847 chr10:99189652(+) A-G intron -    22484847 chr10:99189656(+) A-G intron -    22484847 chr10:99189809(+) A-G intron -    22484847 chr10:99189812(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PGAM1	chr10:99185951-99185952(+) m6A 5'UTR       25456834//24981863//22608085 chr10:99185968-99185969(+) m6A 5'UTR       25456834//24981863//22608085 chr10:99186078-99186079(+) m6A CDS//exon       25456834//24981863 chr10:99186113-99186114(+) m6A CDS//exon       24981863//22575960 chr10:99186122-99186123(+) m6A CDS//exon       24981863//22575960 chr10:99190191-99190192(+) m6A CDS//exon       - chr10:99190200-99190201(+) m6A CDS//exon       - chr10:99190302-99190303(+) m6A CDS//exon       - chr10:99190727-99190728(+) m6A CDS//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PGAM1	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H3-3p
Interactor2: PGAM1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg