Basic Information:

  VIRBase ID:  

VHID00083139

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-3p:  MIMAT0008400          ELF3:  NM_001114309     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H3-3p	ELF3
miRBase Accession/Entrez ID	MIMAT0008400	1999
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EPR-1//ERT//ESE-1//ESX

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ELF3	chr1:201980736(+) A-I      intronic chr1:201980744(+) A-I      intronic chr1:201984653(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ELF3	chr1:201979069-201979070(+) m6A 5'UTR       24284625 chr1:201979115-201979116(+) m6A 5'UTR       24981863 chr1:201979237-201979238(+) m6A 5'UTR       24284625//24981863 chr1:201979245-201979246(+) m6A 5'UTR       24284625//24981863 chr1:201979674-201979675(+) m6A 5'UTR       24981863 chr1:201979777-201979778(+) m6A 5'UTR//exon       24284625//24981863 chr1:201979820-201979821(+) m6A 5'UTR//exon       24284625//24981863 chr1:201979877-201979878(+) m6A 5'UTR//intron       24284625//24981863 chr1:201979911-201979912(+) m6A 5'UTR//intron       24981863 chr1:201980210-201980211(+) m6A 5'UTR//intron       24981863 chr1:201980331-201980332(+) m6A CDS//exon//intron       24981863 chr1:201981106-201981107(+) m6A CDS//exon       24284625 chr1:201981141-201981142(+) m6A CDS//exon       24284625 chr1:201981986-201981987(+) m6A exon//intron       24284625 chr1:201982050-201982051(+) m6A exon//intron       24284625 chr1:201982076-201982077(+) m6A CDS//exon       24284625 chr1:201982107-201982108(+) m6A CDS//exon       24284625 chr1:201982128-201982129(+) m6A CDS//exon       24284625 chr1:201982396-201982397(+) m6A CDS//exon       24284625 chr1:201982992-201982993(+) m6A CDS//exon       24284625 chr1:201983112-201983113(+) m6A CDS//exon       24284625//26404942//27773535//22575960 chr1:201984404-201984405(+) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//22575960 chr1:201984446-201984447(+) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//22575960 chr1:201984459-201984460(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960 chr1:201984471-201984472(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960 chr1:201984476-201984477(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960 chr1:201984484-201984485(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960 chr1:201984502-201984503(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960 chr1:201984516-201984517(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960 chr1:201984612-201984613(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960 chr1:201984620-201984621(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960 chr1:201984725-201984726(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960 chr1:201984737-201984738(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960 chr1:201984750-201984751(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960 chr1:201984770-201984771(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960 chr1:201984778-201984779(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960 chr1:201984830-201984831(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960 chr1:201984862-201984863(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//22575960 chr1:201984978-201984979(+) m6A 3'UTR       24284625//24981863//26404942 chr1:201985015-201985016(+) m6A 3'UTR       24284625//24981863 chr1:201985049-201985050(+) m6A 3'UTR       24284625//24981863//22575960 chr1:201985099-201985100(+) m6A 3'UTR       24284625//24981863//22575960 chr1:201985294-201985295(+) m6A 3'UTR       24284625//25456834//24981863//22575960 chr1:201985302-201985303(+) m6A 3'UTR       24284625//25456834//24981863//22575960 chr1:201985337-201985338(+) m6A 3'UTR       24284625//25456834//24981863//22575960 chr1:201985359-201985360(+) m6A 3'UTR       24284625//25456834//24981863//22575960 chr1:201985376-201985377(+) m6A 3'UTR       24284625//25456834//24981863//22575960 chr1:201985382-201985383(+) m6A 3'UTR       24284625//25456834//24981863//22575960 chr1:201985389-201985390(+) m6A 3'UTR       24284625//25456834//24981863//22575960 chr1:201985467-201985468(+) m6A 3'UTR       24284625//25456834//24981863//22575960 chr1:201985497-201985498(+) m6A 3'UTR       24284625//24981863 chr1:201985580-201985581(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ELF3	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H3-3p
Interactor2: ELF3

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid
Support Database	RepTar//VmiReg