Basic Information:

  VIRBase ID:  

VHID00082663

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-3p:  MIMAT0008399          BLOC1S3:  NM_212550     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-3p	BLOC1S3
miRBase Accession/Entrez ID	MIMAT0008399	388552
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BLOS3//HPS8//RP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	BLOC1S3	chr19:45684247(+) A-I      3'UTR chr19:45684079(+) A-I      3'UTR chr19:45684089(+) A-I      3'UTR chr19:45684085(+) A-I      3'UTR chr19:45683613(+) A-I      3'UTR chr19:45683751(+) A-I      3'UTR chr19:45683549(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	BLOC1S3	chr19:45682740-45682741(+) m6A CDS       25456834//22575960//22608085 chr19:45682769-45682770(+) m6A CDS       25456834//24981863//22575960//22608085 chr19:45682789-45682790(+) m6A CDS       25456834//24981863//22575960//22608085 chr19:45682915-45682916(+) m6A CDS       24209618//24981863//22575960//22608085 chr19:45683050-45683051(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:45683077-45683078(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:45683107-45683108(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:45683127-45683128(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:45683143-45683144(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:45683221-45683222(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:45683351-45683352(+) m6A 3'UTR//intron       24284625 chr19:45684501-45684502(+) m6A 3'UTR//intron       - chr19:45684587-45684588(+) m6A 3'UTR//exon       24284625//24981863 chr19:45684681-45684682(+) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr19:45684823-45684824(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:45684849-45684850(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr19:45685033-45685034(+) m6A 3'UTR       24284625//24981863//22608085 chr19:45685043-45685044(+) m6A 3'UTR       24284625//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	BLOC1S3	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-3p
Interactor2: BLOC1S3

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg