Detail Information

Basic Information:


  VIRBase ID:  

VHID00082258

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-3p:           KANK4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H2-3p KANK4
miRBase
Accession/Entrez ID		 MIMAT0008399 163782
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - ANKRD38//dJ1078M7.1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR KANK4
chr1:62715224(-) A-I      intronic
chr1:62704378(-) A-I      intronic
chr1:62756595(-) A-I      intronic
chr1:62704588(-) A-I      intronic
chr1:62704503(-) A-I      intronic
chr1:62715352(-) A-I      intronic
chr1:62715148(-) A-I      intronic
chr1:62704404(-) A-I      intronic
chr1:62709284(-) A-I      intronic
chr1:62702541(-) A-I      3'UTR
chr1:62704577(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase KANK4
chr1:62703748-62703749(-) m6A 3'UTR       24284625
chr1:62703835-62703836(-) m6A 3'UTR       24284625
chr1:62703900-62703901(-) m6A 3'UTR       24284625//24981863//27371828
chr1:62703920-62703921(-) m6A 3'UTR       24284625//24981863//27371828
chr1:62703934-62703935(-) m6A 3'UTR       24284625
chr1:62713198-62713199(-) m6A CDS       24284625
chr1:62713297-62713298(-) m6A CDS       24284625
chr1:62713334-62713335(-) m6A CDS       24284625
chr1:62718754-62718755(-) m6A CDS       24284625
chr1:62718796-62718797(-) m6A CDS       24284625
chr1:62718806-62718807(-) m6A CDS       24284625
chr1:62718856-62718857(-) m6A 5'UTR//CDS       24284625
chr1:62718865-62718866(-) m6A 5'UTR//CDS       24284625
chr1:62728766-62728767(-) m6A 5'UTR//CDS       24284625
chr1:62728828-62728829(-) m6A 5'UTR//CDS       24284625
chr1:62728860-62728861(-) m6A 5'UTR//CDS       24284625
chr1:62728969-62728970(-) m6A 5'UTR//CDS       24284625
chr1:62729015-62729016(-) m6A 5'UTR//intron       24284625
chr1:62729033-62729034(-) m6A 5'UTR//intron       24284625
chr1:62732413-62732414(-) m6A CDS       24284625
chr1:62732423-62732424(-) m6A CDS       24284625
chr1:62732429-62732430(-) m6A CDS       24284625
chr1:62732484-62732485(-) m6A CDS       24284625
chr1:62734123-62734124(-) m6A CDS       24284625
chr1:62734138-62734139(-) m6A CDS       24284625//27773535
chr1:62734151-62734152(-) m6A CDS       24284625//27773535
chr1:62734169-62734170(-) m6A CDS       24284625//27773535
chr1:62737176-62737177(-) m6A CDS       24284625//27773535
chr1:62737186-62737187(-) m6A CDS       24284625//27773535
chr1:62737215-62737216(-) m6A CDS       24284625
chr1:62738392-62738393(-) m6A 5'UTR//intron       24284625
chr1:62738421-62738422(-) m6A 5'UTR//intron       24284625
chr1:62738437-62738438(-) m6A 5'UTR//intron       24284625
chr1:62739048-62739049(-) m6A CDS//intron       24284625//27371828
chr1:62739163-62739164(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828
chr1:62739187-62739188(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828
chr1:62739229-62739230(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828
chr1:62739254-62739255(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828
chr1:62739281-62739282(-) m6A CDS//intron       24284625//24981863//27773535//27371828
chr1:62739329-62739330(-) m6A CDS//intron       24284625//24981863//27773535
chr1:62739389-62739390(-) m6A CDS//intron       24284625//27773535
chr1:62739512-62739513(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828
chr1:62739531-62739532(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828
chr1:62739561-62739562(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828
chr1:62739587-62739588(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828
chr1:62739673-62739674(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828
chr1:62739689-62739690(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828
chr1:62739697-62739698(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828
chr1:62739737-62739738(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828
chr1:62739819-62739820(-) m6A CDS//intron       24284625//27773535
chr1:62739974-62739975(-) m6A CDS//intron       24284625//27773535
chr1:62739987-62739988(-) m6A CDS//intron       24284625
chr1:62740160-62740161(-) m6A CDS//intron       24284625
chr1:62740361-62740362(-) m6A CDS//intron       24284625//27371828
chr1:62740455-62740456(-) m6A CDS//intron       24284625//27371828
chr1:62740468-62740469(-) m6A CDS//intron       24284625
chr1:62740506-62740507(-) m6A CDS//intron       24284625
chr1:62740560-62740561(-) m6A CDS//intron       24284625
chr1:62740626-62740627(-) m6A CDS//intron       24284625
chr1:62740662-62740663(-) m6A CDS//intron       24284625//27773535
chr1:62740668-62740669(-) m6A CDS//intron       24284625//27773535
chr1:62740690-62740691(-) m6A CDS//intron       24284625//27773535
chr1:62740722-62740723(-) m6A CDS//intron       24284625
chr1:62740752-62740753(-) m6A CDS//intron       24284625
chr1:62747226-62747227(-) m6A CDS       24284625
chr1:62747259-62747260(-) m6A 5'UTR       24284625
chr1:62747284-62747285(-) m6A 5'UTR       24284625
chr1:62784794-62784795(-) m6A 5'UTR       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate KANK4
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H2-3p
Interactor2: KANK4

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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